Ll_transcript_378229

• Id Trinity: TRINITY_DN50763_c2_g1_i4
• Name Transcript: Ll_transcript_378229
• Sequence: AAAAAGCGTTGATATTAAAAACTATATAAGCCTTGATCTTATTTATCTAGTTTGGTAAAGTAGCGTAGACGACGAACCGAAACGAAATTTCCAACCTTCA TTCCAAAATTTTCATGTCCATCTTGCCCTCACAAACCCAAACAGCACCTTCATCTTCATCATCTTCATCTTCTTCAAACCCTAATTCCCAACATGGATTT TCAATCCCTTCTTCTTCCTCCATCCTCGACCTTCCTCTCGGATCCCTCCAGATCCACGATTCCCATATTCCAGGTCCATCAATTCCTGCTGCAGAAGATT CTGGTGGAACTTCCGAAAAGGTGACAGAATATGGGTCTCCAAGTGGTTTGGAGGCTTCATCTCAGCAAAACTCTAGAACACGTTCTAGGAGTCACTCAGG AAGACGAACGTCTGGATCATCTCAATCAGTGGGGAACACAACAGGAACAACTTCTTCTCAAAGAAGTCAACAGACTCTTGGGTCTGTAAATTCTCATGGA AACTCACCTTTGGCAGGAAGGAAGTCTCAGATGGTGAATGGTAATTACTTGCTGAATTTTCAATATGATCCAATATCTCGTTCTCAGCCAAGGGGTCCTC CTCCTCCTCCACCCAGAAGGCAGCGAAAGAGAAAACCATACAACAAAGATTTGTTTTTGCAGGCAAATTACAAATTCATGGTGCTAGATTCAGGAAATTA TTCAGCTGAGTCTATGGATCCAGATAAAATGTTGCAGTGGGAAGATATTATATGTGTGACTTATTCGACCCCCCTTCCAATTCAGTGTCCAATTTGTTTG GAGTATCCCCTCTGTCCACAAATAACCTCGTGTGGACATATTTTCTGTTTCCCATGTATTCTACAATACCTATTATTGGGTGAAGAGGATAACAAAGGTG AATGCTGGAAAAGGTGTCCTTTATGCTTTGTGATGGTATCTGTCAAAGATTTATATACCGTACACATATCAAATGTCAAACAGTATCAAGTAGGAGATAA TATTGAGTTCACATTTTTAACTCGAAAAAAGGATTCATTTACTCTGTCCCATAAAAATAAACAAGAGACAGATACGACATCATGTGGCAATGAAGATTTT TGTGATCCCTTTTCTAAGTTTACACTCACATCAGATGTAGACCTTTCAGTGAGACATGCAATCTCAGATCTAGATGGTTGGCTGGCCAGGGCTGATTCAG GTCTTGTTGATGACCTAGAGAAGCTTCCTTATGTTTGTGCTGCAATGCAGCAATTAAAGCAGAGAAAGAAGTATTGGAACGAGCACAGAGCTTGTGACAG TGAAAAATCTTCTAGGCTTATTGATTATGGGCATCAGATACCATCAGCAGCTGTAAGTTTTATTGACACTGATGATGAAACCCATTCTAATGGATCAAGA ACTTCCTCTACAGATTTCCATGATCGAAGTAAGGGCATAATATTGGATAAACCAATTGCTGGGACCTCTCCGGATCAAATTTCGGATGTGGAGAAAGTTT TACCAGATCAGGAAATGAATTTATCTTCATATGAGGAGAAAAATAGTATCCGAAGGCTTTCAAATGGTAGTGGAGATGTTAAGGAAGGTGACTCATACAA TTTCTACCAGGTAATTGATGACAATTGGTTTGTGTTATGTTTTTCTACACCCGTCTTGCCTGATATTTTCCTAATTGGATAGAGCAATTGTGTCATCATA TGAACTATGCGCAATAATTTGACACTGTTTACACCAAAATGGGTATGAACTATATATAGAGAATTTAATGGAAATACGTGAAATAAGATGAAAGGATGAA AGGTTGTGCTATGTTTGAATGATTAAGAAGGGAGGAAACAGAGAAGTGTTATGTGTTAAATTCCAATATGACCCTTAGAGATGTTTCTCAAGAAGCTGAA TTATATTTTTCATTTTATTTTTTTGGACAAAATAAATGTATTAGGCTGAACACAAAGAAGGACAAGGGATGCTAATTGCAAAATAAAATGAATAGGGGAT AAAGAGAACTAAAAAAATCAATGAAGCAAAGCTATCCAATCTCTCAACATTTATGTAAGAAAAAAACCCTTTTAAGAAGACCATGGACTTTAAATAGTAA ATGGCAAGTTTTTAAAACAAAACAATACAATACATTATCCCTCATTATCCTTCAATTTTTAAGGGAACACAGAGAGAGAGTTGGAGGGATAGTGGCAGTC CCTTCCCTTTTCCATTGATCCTAACTAGGGATCTCGTTTTTTTCTATCCGCTTTGCTTTCATTCCTCATTACATCTCCTAACAAACTCTTGAGGAAAATC AGAATGAATATCTGATTAAGAAAGCAGGACGCAGCATGTTATTCAAAGAAGTAAAACATAGTACAATAGTACTTCTTCAGCATTCCATATTTTTCGTGCA TCTGCTCCCTTCCGTTGTAACTGATTTTCTTAATTTCTTGTACGCAATGGTTGTTTCAAAACATTACTATTATTTTAGGAGGAATTAGCTAAGTGTCAAG ATTTTGTTAAGGCTACACCAAATACTGTATTTGGATTATTGACCACTTAACCTGCATGACGGCTTTTAGTTATTTACCAAATTTTTAATCACAAGTGGAA AATTTGAGCTGATTCTATATTATATTATTATCTTTGTGCACCAACAGTTGGAAGAGGTTGAGGTACGTGCAATGTGCATTATTTTTCGGATTAAATGCAC ATTATGTCTTTATTATTATTGTTAGTGGCATTCTGAAGATGTAGTATTGTACTATGTTTTACTAAGATTGAATGGTTTACTTATGCTGCTGTCTTCCAAT TGTATCAGTGGATGCTGATAAATTTGTGGCTTGGTTATCCTCACTGACAACATGTTGCTTTTGAACTTGAATTACCCATTGGTTTTAAATCACGTCTATC TATTTTAAACTCATTTATGGATTAGTCCCTCATGATTGTTATATGGGATATGGGATGCTGCTTTTAATTTTATTGGACAAATCTTGAATTCTTGATGCTT AAAAAATTTCTAATTATTTCCCCTTTACTGTTGACTTTTGGTTGTTACAATGCTCATGTCTATTTCAGGCTTGTGATGGTCAGCATGTAATTCTTCATAC ATTGAACATGAAAGTTTTACTTCACCATTATGGGAGCTATGATAAGCTTCCACACAGAATAAGTGGAAGGATTCTGCAATTGGAGGCAGTTACTCAGTCC GAGGCCATGAGGAGGCGATATCGATTCATAAGCCATTTTCCGTTAACAACAACATTTCAGCTTTGTGAAATTGATTTGAGTGATATACTGCCTCCTGAAG CACTGGCCCCATTTATGGATGAAATAAAGAAGCGTGCAAATCAGAGGAAGCAGCTTGCAAAGAAGGAACTAAAGGAAAAAATCAAGGCTGAAGCTGCTTC TACTTATTCTGTTACCATACCAACAAGTTATCAGTTTGCTTCTCGTGATAATCCTCCTGTGTTCTCGATGGATGACTTTGGAGCTTTGGGAAATTCCGCT ACGTCATCAAGTCCTCCAGTTGTCGGGGAGAGAAAATTGTTCTCAAATGTTACAAGGCTTGGCTTTGCTGCTGCTCATGATTCTCCTTCCCTTCAAATTC AAGAGACTGGAGGATCACATGATAACAATACAACCACTGGGTCTTCTAGTGCAACAGGTTTGAGAAATGTGGAGGCACCATCATATTCCAATGTTACATC CAGAGCAGAATCTAATATAAGCTTGAATGCACCGAAGACAAACGACGCAGGGAAGAGGGGAAAGAAACCAAATCGAGTTCTTCTCTCAACAGCTGGTGGC AGGCGCTATTGAAGACTCGGTCACAGTCTCTTGGTAAGATGACTCCCAACCTCACCCCACCCTATACCAAGCCAAATAAACAATTCCTACCTCTTTGAAG TGATTTCAGTGTGTAGTAATCAACCTTTAATAGATGATATGTGTGTACTTCATGCTCCTCTTATTAACAGGCAGACATGTGAAGAGAGAATAAATGTTTA AGTATACACAATCTCTGTCAATCCATGACAATTTAGGTTCAGTTGAATATTTACGTGGGTTTGTTGTTGACTACTTATTACGGTATGAGTAGAAATGAGT CGAGTCGAGTCAGACACTTGAAGTTCATACTTATCCATGCATGAGAAGATTAGGTAAATGAGTCGAGTCGAGTCAGACACTTGAAGTTCATACTTA
• Tissue: pods
• Gene name: LI_gene_179718;
• Additional information: details;

Expression of Ll_transcript_378229

FPKM

• PAB: 0.1
• PNAB: 0.3
• PS1: 0.2
• PS2: 0
• PS3: 0
• PW1: 0.2
• PW2: 0.2
• PW3: 0.1

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_378229

• Blastp: RING finger protein 10 from Xenopus with 40.11% of identity
• Blastx: RING finger protein 10 from Xenopus with 37.78% of identity
• Eggnog: -
• Kegg: Link to kegg annotations (734904)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019447408.1)
• Pfam: Zinc finger, C3HC4 type (RING finger) (PF00097.24)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;