Ll_transcript_378339

• Id Trinity: TRINITY_DN50787_c1_g1_i5
• Name Transcript: Ll_transcript_378339
• Sequence: AGAAGCTGTTCTACTCTCTCTCCCAGAGGTGATGACATCTGCACACTCTTTCTTTTCCATTGGGTTACTTTTTTGTAAATTGAAGATTTCTCTTTAATCT CTCCTCACATTTTTCAGTTTCCATTTTCATTTTTATTTATATATTATTATTATTATTCCTTTCACCAAAACAAAGACCCTCTATTTTCTCACCTTCTATC CCTCTATGCTTGCTCTTCTCTCTTTGTTTTTTTGTTGTTGAAAAACAACTGAAATCCAATAAAAAAGCATCCACAACAACCATGGACTGTGTTACTCATT CTCTCACTTGATCTTCCTTTGAGTTTTTTCTTCATAGATCGGCTTTGTTTCATTTCCTGTATGCCAAACTTGGTGCACAACTTGCATCTTCATTCAGGAA CATTTAACTGTATTGAGTTGGGAAACTTATAGATTCCATCAATGCAAGGGCAAAGAAGTACGGTTGGTTCCTTGCCTGAAACCTTAGAATTTGATTGTGG ATCTACACCGAGTAACACTACAGTTAATCCGCCAATTTTCTGGAATAATATGCAGAATCAGGCAGAAAACCATATACCCGACTATATACTTTCCCCTAGT GAGATTAACTCATCTTATGTGAATTATATAAACCAGGATTGGCAGAACTTGAGTGGATGGAGCTTAGGTGAGCCAAGTTCCAGTAATACACAGAACGAGG TTAACAACAATGAGCAGAAAAGAGAACTCGGGTGGTCTTCTTCAGTAAGTGCTAGTGCAATAGGTGGTCCAATACTAGAAAGGTGCTTTAGACCAGCGAA TGCTCTTTCTCTGGACAATGTCATTACAAGTTATGTGCCTATGCACAGCTCCAATTCTCACTTGGTTTCCCAGAGTCTTAATTTAAATGCAAGCTTAGCA GATAACGGCAGTAATAATAGTCATCATGCGGAACATCCTAACTTGTCCAAGTCTAGTGGACCAATAAATGAGCATATTCCACCTATTACTAGTTCTGGTT CTTTTATGCTTCCTTCTGGATGTAATGGCTTTTTGATTGAGGATAGTGATGGTAGGCCAGGTTGTTCACAAGACACTCGCCGTGTATCTCGTAAAAGAAA GGCTGTTGAACGAGACTCTGGACAATCTTCAGATGTTGGAAGTTGTAGCTACAGCCAGAATAGAGATGGTAGTGCTTGGAGTACACTTCCTACTCAGAAT TATGCCGGGAGCAGTTTTAGAAGAACTGCTTCAGCAGAACAGGTAAATGCAAGACTTGGCCTGAGTATGGGTAATGTTACCTCTGAAAGTGTTCTGGATA CAAATGTTGCAGGAAGATCAGAAAGCTTCCTCAGAAATTGTCGTTTGCGGATAAATCCCTCAAGCCAACAAAATTCCATTCCTCCCGCTGCATTCCCAAG TGGGAGAGTGATTAGGAGTAATGGCGTTTCTTCGTCCACTTCAACATTGCAAAGGATTCATCCTGTTGATAATTCTCTAGACTTGAGGTCAGTACCACCA GTTGATACTACGATTCCTCAAAGCCAGCCCCTTCGAGTTCATGTTCCTGCTTTACCAAGGAATGCACAATCATTTAGGTGGAGTGTCGGATCTAGCTCAA CAAACAACCATTCATCAAACTCGGTTATAAGTGCAACTAGGGATAATCTACCACAACAGGAAGCTAGCTCAAGAAGTATGGCTAGAAACATTTTAGAACA ATCGATATTTTTACCCCCAACCAATTTAAGAAATTTGGTTCGAAATCCCGCAATTAGAGCTTCGAGTAGTGCAAATTTAAGTATCCCGGGAAATGTTACT TCATCCCAGCCTGGGTCAAATTCCGCTATCAATCCACCATCTGTCTCACCATGGGTTTCTCAGCCTAATCCTCAACAGCATTATCCACGCAGGTTAGCTG AATATGTTCAGCGGCCCATGTTTTCTCCTGGTTCCGAGGCTGCTGGAAATCCGATCAGCAATTATTCTTCCTTGCGTAGTCCAGCTATTTCATCTGGGTT GTCATCGGGGGTGGTACATCTGGGGTCCTCTTCAGTATTGGAGAGGCCAGGTGATAGTGAATATGCAATTGCTCCTTCATTGCGATCATTGCCTGGTGCA GGAAGTGGTAGAATTGTATCTGAGCTCCGCGATGTGTTGGGCCGCATGCGTAGGGGTAGGAACCTACGGCTTGAGGATGTTATGATCCTCAACCAGTCAT TGTTTCCTGGAATAGCTGATAATCATGATCGGCACAGGGATATGCGACTTGATGTTGATAACATGTCTTATGAGGAGTTATTGGCTTTGGAAGAACGCAT TGGAAATGTATGTACTGGATTGAGTGAAGAAACCGTACTGAAACATTTGAAACAGAAGAAGTATTCAGTTGAAACAGGATCTCAGCATGAGGCAGAACCC TGTTGCATTTGTCAGGAGGAGTATAAGGATGGAGACGATATGGGATCGCTGAATTGCGGGCATGACTTCCATATGGACTGTGTAAAACAATGGCTAATGC ATAAGAACCTGTGTCCCATTTGTAAGACAACAGGCTTGGCAACATAAGAAACTTGTCCCTTGATTATGAGGGAAACATTCTACCTTAGACAATGAAGAAA ACTAGCACAATTGAGCATGAAATTCTTGTTCATTGAAGCTGAATTTTCTGGCATTGTGACCCTTGTCATGCCTTAGCAGAATTTCTTTTATCATTTTTGT TTATTCATCTAAGCCAATGTCTCCTGTTTAAGGTGACAGATGAGGTTATTGGTGTGGATGAAGGACCATTTATTGACTGTACTTGATAAAGTCTTATTTT ACATTTTATGAAAATTTTTACATTGTTCATATTGCTGGTATTGGATTTATTGAAGGAAAAGTAGTTTTAATTGTAAGAAACTTAGGGTTGGAATGTTGGA TGTTATCATTAGTCCTAATTTTATTAATATGTATGAATGC
• Tissue: pods
• Gene name: LI_gene_179931;
• Additional information: details;

Expression of Ll_transcript_378339

FPKM

• PAB: 2.3
• PNAB: 3.8
• PS1: 6.3
• PS2: 4.7
• PS3: 6.5
• PW1: 3.6
• PW2: 4.4
• PW3: 4.2

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_378339

• Blastp: Probable E3 ubiquitin-protein ligase RHG1A from Arabidopsis with 37.28% of identity
• Blastx: Probable E3 ubiquitin-protein ligase RHG1A from Arabidopsis with 35.81% of identity
• Eggnog: zinc ion binding(ENOG41121N2)
• Kegg: Link to kegg annotations (AT5G42940)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019436945.1)
• Pfam: RING-H2 zinc finger domain (PF12678.6)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;