| Id Trinity | TRINITY_DN50807_c3_g3_i1 |
|---|---|
| Name Transcript | Ll_transcript_515006 |
| Sequence | AGTTCAAAAATATCTCTAGAAATGGAATAAAAAATTGTTGCTAGGATTTTAATATGCGTAGATGTAGAATTTTAATTAAACTGAAATTATTGATCATTAC ATAGAATTCAATTAAGATATTGTATGAAAGTATGATTAGATTTCTTCAATTTTTTTATTTCAGAATGAAAATATTTTTATTTTTAACTGGCTAAGTTCAA ATCAAAGAAGTCTTTTTTTTGGGGGGGTCTGACCTTATTTGACTTATTTTTTTTTAGTATTCCTAATTTATTACATTAATTAATATCTAAAAATTATAAT AAAAATAAAATTATACATATATATATAATATATTCATATCTATCTAATACAATAAAAATAAGAATTCTATAAAAAATCAAAAATACAATGAATTTTCTTA AAGAACAAAATGTTTGTTATGCTTAATATCTTTAGTTTGGTCTGTATTTGTATTCACTCTACCTTTTATTCAAGTAGTTTTTTCTTGGCGAAATTACCCG AAGCCTACGCTTTTTTAAATCCAATTGTCGATATTATGCCAGTAATACCTCTATTTTTTTTTCTCTTAGCTTTTGTTTGGCAAGCTGCTGTAAGTTTTCG ATGAGATCTTTAATTTGAATAATGTCCTAACAAAAAAAAAAAATTAGAATTTAATTTATTGGAAAACAATAATTTGAACATTTTAAAAATTTATAAGATC AGATAAGTCTTACAGGGTGAATCCTCGATTCAAATATTGATATTGAGATTTTTTGATAGACAATAAAAATCTGGACCATCTCATTATTTCCCGATTCTTA CGTTTTTTCTATTGAGAAATCCCAATCTGATTTTATTATTACGATTATTTTATTCGATTTGAGTCCACCACCAATACCTAGATTGTGGATATGAAATAAA ATTTTTGGTAATAGTAATAAAGGGATCGACTCTTACTACAAATAAATTTTCTAATTTTTTCTATTTCCTCGAAAACACTTACTTTCTTATCTTAGAAGAA ACTTAATGTGTAATATAAGAGAATCTATTCTCTTTCTCTGTCGTTTTTTTTTTAATTATTCTTGGAGATTTTGTAATGCTTACTCTAAAACTATTTGTTT ATACGGTAGTTATATTCTTTGTTTCTCTTTTCATCTTCGGATTCCTATCTAATGACCCTGGACGTAATCCAGGACGTGAAGAATAAAAAAAATATTTTTG GTTTTCTGTGTTTTGTTTTTCTTGCTTGTGCCGGATCTGTGGATTTTTAAATATTTTTTTATTAGGGTTTTATCTATTGTACATTTTAAACTAGTAAATA AAAGAGTAAGTAAAAAAAATAAAACAAAAGAAGATCCATAAGGTCAAAAGAACAAAATACCAAATAATCAATGGAAACGGAAAGAGAGGGATTCGAACCC TCGGTAAACAAAAAGTCTACATAGCAGTTCCAATGCTACGCCTTGAACCACTCGGCCATCTTTCCCTCCTACATAATATAATGATTATGACCCAGAAACC GGGTGAATAGTGAATCATTTATATTCCCATTTTTTTGCATAGAGGCGCATACAATCAATTCGAACTAAAAAAATAGAAAAAAATGTAGCAAAAAAAAATC TTCTTCGAAGCTGTAGGATAAACCCATTTTTTTATTAATGAGTCTGTTTTTACGTTATTTCGTACAGTATTTACAATTCCTTTGTTTGTGGGATTATTTT CTTTTCTCGCGCGATAAAAAAGTAAATTATAGAATGGATTGCTACCTATGCCCAGATCTCGGATAAATGGAAATTTTATTGATAAGACCTTTTCAATTGT AGCCAATATCTTATTACGAATAATTCCGACAACTTCAGGAGAAAAAGAGGCATTCACTTATTACAGAGATGGTGCGATTTGATTATCTTTTTTTTTATTT ACATTTAGCGATCCCAGTTTTAGGAAAAAAGACACATTTTTCGGAGAGAAAGAAAGAAAAAAATTGAAAAAACCTACGCTTGCTGAAGGTGAAGTTTGTA AATAAAACAATTAAATCCTTCTGTCGTGTATCCCCGATTAATGCAGCCTCATATACTTCTATTTTAGGTTTATAGTATTAAGCGAAAGGTTATACCTATA CCTAATGGAGTTAGGTCAACCCTACTCCACTAGTACTAATAGGCGGCCTGGGGGAAGAAGCACTACGCTTAGGAATCAACAACACGAAAGAAAACTTTGT AAAACTCAAATATCTTTCCTTACGGGATCGGAACTAACAAAAGAATGGTTGGGACAACAAACATCCATCTCGTTCGTATTTTGGATACCCGTATAACCAT CCAAGACTGTTGGAGTGACTAATTCCAAGAAATTAAGCGGCGTTGAGGACAAAGAAATTGTTGGAGTTACCCTTTCTTATCCAGTACCAACATACTTGAT GTTAAGAACAGATCTTTTACAGGAAGGTTGGCTAGAGATTTCTTGTAAAAACACTAGCCCCGCTCAGTTGATAATGAGAATACTGCAATCTTTTTTGATT CTATGTATTTTTTTATCATTATACACATAAAGGAGGAGCCGTATGAGATGAAAATCTTACGTACGGTTCTGGAACGGAGATTCTTTGAACTGAATGACGA CCGTAACGGATGTCGGCTCAATCGGAAGGAAATTATGCGGAAGCTTTACAGAATTATTATGAGGCTATGCGACTGGAAATTGATCCCTATGATCGAAGTT ATATACTTTATAACATAGGCCTTATCCACACGAGTAACGGAGAACATACGAAAGCTTTGGAATATTATTTTAGGGCACTCGAACGAAACCCCTTCCTACC CCAAGCTTTTAATAATATGGCCGTGATCTGTCATTACGTGCGACTATCTCCACTATAGAAAGAAAAAAAACAAGCAAATCCGCTAAGAAATACGAAAAAA TAGGCTTTCTACATATATATCGTACAAAACAACGACAACGATTTTTATCAGCTGTAGCAAAGAAAAAAACTTCATAGAAGTCGAAATATGAAGAAATATA TATGCCTAGATACTTTTTTCTATGGATAAAGATTTAATTGATAGAGGAAGCACCGTAAAGATGCATTAGCGAGGTTTTGGACCAATAAAATAAGAACTGC TTACTTATATCATGATAGAAAAGTTAGGAATCTACTTATGTAATAAAGTAGATCCCCTAGGGTTTTGAGCAGCGGTGTAGTATCAGATCCCCAAGATAGT AAGTTTTTTCTTTCTTATCAAGAAAAAACTTTCTCAAAGATTCTATAGCAATTGATATATCATATATTTTTATATATCATATATGAAATCGAGATAGTTA CCTTTGAGAAAATTATAATCAGAGTGTTAATGCCTATGCTTTATTCTTCTGAAGGTAGGAGAAAAGATAAAACTATAAAAAGGGAATTAAATTCTTCGTT AGTAATATTAATCCAAGTTGAAGTTTGAAACTCATGTAATTAACCTCTTTTGGTTAACTCCAGAAAAAAAATGGAACACCAAAAGAATTGACTTGCTGAG CCGTATGAGGCAGGAAACTCTCAAGTACGGTTCTAAGGGAAGGAATTTACTCACCTATTCCGACCGCGGAGAACAGGCCATTCGACAGGGATATTCGGAA ATTGCGGAGGCTTGGTTTGATCAGGCCGCTGAATATTGGAAACAAGCTATAGCCCTTACCCCTGGTAATTATATTGAAGCACAGAATTGGTTGAAGATCA CAGGACGTTTTGAATAAGAACATTCTGTTTATTATTTATATTTTTTATATTTCTTTTTATCTATTCTATTTTGATATTTGATCTATTTATTATATATTTA ATTTGTTATAATATATTTAATTTGTTATAATTTATTGTTTGTTGTCCCCATCAGTCAAATAAAAAATATCGTTTATCGAGGAATAACTCATCAAAGAATT TCATTATATCCCTTCTAAGTAAGGCCGAAAGTTCTATCTAGGAACTTTCTAATTAAAATCTGAATACGCTAGTTAGGTTGCACAAAAAAACTATTTAACT TCAATTCAAAACTCAGAAAATGTTTTAGAAGATTCAAAAAAGGTCCGTTGAGCGCCTCACTGCTATGTCATAATAGATCCGAACACTTGCCTCGGATTGA CTTCTAGATCATAATTGTTCTAGTGAAGAACTAAAGAAAATAGATTAAAGAAAATATAGAATAGATTAGAGATAGATGGGAGATAAAAGAGAAAGAAACT CAATATAAACATCTCTCATAAGTTCACTAATTATGTTTTATGTTGGCGGGTCTCTTTGTATGTGTTGTCCGGAAAGAGGAGGACTCAATGATTATTCGTT CGCCGGAACCAGAAGTCAAAATTTTGGTAGATAGGGATCCCATAAAAACTTCTTTCGAGGAATGGGCAAAACCCGGTCATTTCTCAAGAACAATAGCTAA GGGACCTGATACTACTACTTGGATCTGGAACCTACATGCTGATGCTCATGATTTCGATAGCCATACTAGTGATTTGGAGGAGATTTCCCGAAAAGTATTT AGTGCCCATTTCGGCCAACTCTCCATCATCTTTCTTTGGTTGAGTGGAATGTATTTCCATGGTGCTCGTTTTTCCAATTATGAAGCATGGCTAAGTGATC CTACTCACATTGGACCTAGTGCTCAGGTGGTTTGGCCAATAGTGGGCCAAGAAATATTGAATGGTGATGTAGGCGGGGGTTTCCGAGGAATACAAATAAC CTCTGGTTTTTTTCAGATTTGGCGAGCATCTGGAATAACTAGTGAATTACAACTCTATTGTACTGCAATTGGTGCATTGGTCTTTGCAGCCTTAATGCTT TTTGCTGGTTGGTTTCATTATCACAAAGCTGCTCCAAAATTGGCTTGGTTCCAAGATGTCGAATCTATGTTGAATCACCATTTGGCAGGGTTACTAGGAC TTGGTTCTCTTTCTTGGGCGGGGCATCAAGTACATGTATCTTTACCGATTAACCAATTTCTAAATGCTGGGGTAGATCCCAAAGAGATCCCACTTCCTCA TGAATTTATCTTGAATCGAGATCTTTTGGCTCAACTTTATCCCAGTTTTGCCGAGGGAGCAACCCCCTTTTTCACCTTGAATTGGTCAAAATATGCAGAA TTTCTTACTTTTCGTGGAGGATTAGATCCGGTAACTGGCGGTCTATGGCTAACCGATATTGCACA BLAST |
| Tissue | pods |
| Gene name | LI_gene_180137; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_515006
| Blastp | Photosystem I P700 chlorophyll a apoprotein A1 from Arabis with 99.66% of identity |
|---|---|
| Blastx | Photosystem I P700 chlorophyll a apoprotein A1 from Olimarabidopsis with 99.66% of identity |
| Eggnog | - |
| Kegg | - |
| CantataDB | Link to cantataDB annotations (CNT0002248) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_020981516.1) |
| Pfam | Photosystem I psaA/psaB protein (PF00223.18) |
| Rfam | tRNA (RF00005) |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |