| Id Trinity | TRINITY_DN50807_c3_g3_i5 |
|---|---|
| Name Transcript | Ll_transcript_515014 |
| Sequence | AAGAGGGGTAACAGAAGTTACCCCAAAATCAGCCACCACAGTCACCTCTTTCTCTTGTTCATCACCATAACCATCTTCTTCCTCGACTTATCCTCTTTCT TGTCTTCACGACGCATCTTCCTCCTCCAGCGGTGGCGATCGAAGCTAGCCCGAGGGAGACCACTGTGGTGGTCTTAGAGGCACGGCGAAGAGAAACGTCT CGTCTCCTCTCCCTCACTTTTCCTCTGTGTTTTTTCGGTTATGTTTCCGTCATAACGATGGGAAAAAAGGGAACCAAATCCCTACGTTTATGGGCTCTCC TCTTTGGGTTTTATATCCTACCTCCAAACCATGGAATCGGCGTAGCTATGAAATTTGGTTGTTACACACCATTGACAATATAAATGTGCCACTTTACATA GTCAGGAAATATATGCTTTTTGGTGGTGTTATCAAATCCAGCATTTTGGGCTGATTGGTAAGCATGTGCTGCAATGTAGTACCTTGAAAGTGGTTGGTCA CCATTGATGAGAACATCAGTAGTTTGGCCAGGACCTAGTATTAGAACTATGGTAGTGAAAGGTTTGAGGTATGAGGCATCAGCACCAACCACTGTGAACT TGTGGTTTGCAATTGTGAAGAAAAGTGGTTGATTGAGTACAACATTGATTACACGAAGTAGGTTGGTCTCTCCAGAATCTATTGGAACAGTTGTGGTGCC TTGGGTAGAGCACTTATAAAGATCACCAGGTTGACCAGTAATAGTGTCTGCATCAGATACACTTGGTGCTCCTCCTGTTTGTGTGGCCTGCCCTTATTTT TTAGGACAACTTGATAATTGTAGTAACTTTCAAATAATTGGTATCCTAAAAGTATCAATACATGTCAGTGGATGCCATAACAAATCTGAGTCTTTGATAT AACACATGCTAAGCTTTATTAGAATTAGAGTTTTTGATAGACAATAAAAAATTGGACCATTTCATTATTTCTCGATTCTTACATTTTTCTATTGAGAAAT CCCAATCTGATTTTATTATTACGATTATTTTATTCGATTTGAGTCCACCACCAATACCTAGATTGTGGATATGAAATAAAATTTTTGGTAATAGTAATAA AGGGATCGACTCTTACTACAAATAAATTTTCTAATTTTTTCTATTTCCTCGAAAACACTTACTTTCTTATCTTAGAAGAAACTTAATGTGTAATATAAGA GAATCTATTCTCTTTCTCTGTCGTTTTTTTTTTAATTATTCTTGGAGATTTTGTAATGCTTACTCTAAAACTATTTGTTTATACGGTAGTTATATTCTTT GTTTCTCTTTTCATCTTCGGATTCCTATCTAATGACCCTGGACGTAATCCAGGACGTGAAGAATAAAAAAAATATTTTTGGTTTTCTGTGTTTTGTTTTT CTTGCTTGTGCCGGATCTGTGGATTTTTAAATATTTTTTTATTAGGGTTTTATCTATTGTACATTTTAAACTAGTAAATAAAAGAGTAAGTAAAAAAAAT AAAACAAAAGAAGATCCATAAGGTCAAAAGAACAAAATACCAAATAATCAATGGAAACGGAAAGAGAGGGATTCGAACCCTCGGTAAACAAAAAGTCTAC ATAGCAGTTCCAATGCTACGCCTTGAACCACTCGGCCATCTTTCCCTCCTACATAATATAATGATTATGACCCAGAAACCGGGTGAATAGTGAATCATTT ATATTCCCATTTTTTTGCATAGAGGCGCATACAATCAATTCGAACTAAAAAAATAGAAAAAAATGTAGCAAAAAAAATCTTCTTCGAAGCTGTAGGATAA ACCCATTTTTTTATTAATGAGTCTGTTTTTACGTTATTTCGTACAGTATTTACAATTCCTTTGTTTGTGGGATTATTTTCTTTTCTCGCGCGATAAAAAA GTAAATTATAGAATGGATTGCTACCTATGCCCAGATCTCGGATAAATGGAAATTTTATTGATAAGACCTTTTCAATTGTAGCCAATATCTTATTACGAAT AATTCCGACAACTTCAGGAGAAAAAGAGGCATTCACTTATTACAGAGATGGTGCGATTTGATTATCTTTTTTTTTTATTTACATTTAGCGATCCCAGTTT TAGGAAAAAAGACACATTTTTCGGAGAGAAAGAAAGAAAAAAATTGAAAAAACCTACGCTTGCTGAAGGTGAAGTTTGTAAATAAAACAATTAAATCCTT CTGTCGTGTATCCCCGATTAATGCAGCCTCATATACTTCTATTTTAGGTTTATAGTATTAAGCGAAAGGTTATACCTATACCTAATGGAGTTAGGTCAAC CCTACTCCACTAGTACTAATAGGCGGCCTGGGGGAAGAAGCACTACGCTTAGGAATCAACAACACGAAAGAAAACTTTGTAAAACTCAAATATCTTTCCT TACGGGATCGGAACTAACAAAAGAATGGTTGGGACAACAAACATCCATCTCGTTCGTATTTTGGATACCCGTATAACCATCCAAGACTGTTGGAGTGACT AATTCCAAGAAATTAAGCGGCGTTGAGGACAAAGAAATTGTTGGAGTTACCCTTTCTTATCCAGTACCAACATACTTGATGTTAAGAACAGATCTTTTAC AGGAAGGTTGGCTAGAGATTTCTTGTAAAAACACTAGCCCCGCTCAGTTGATAATGAGAATACTGCAATCTTTTTTGATTCTATGTATTTTTTTATCATT ATACACATAAAGGAGGAGCCGTATGAGATGAAAATCTTACGTACGGTTCTGGAACGGAGATTCTTTGAACTGAATGACGACCGTAACGGATGTCGGCTCA ATCGGAAGGAAATTATGCGGAAGCTTTACAGAATTATTATGAGGCTATGCGACTGGAAATTGATCCCTATGATCGAAGTTATATACTTTATAACATAGGC CTTATCCACACGAGTAACGGAGAACATACGAAAGCTTTGGAATATTATTTTAGGGCACTCGAACGAAACCCCTTCCTACCCCAAGCTTTTAATAATATGG CCGTGATCTGTCATTACCGCGGAGAACAGGCCATTCGACAGGGATATTCGGAAATTGCGGAGGCTTGGTTTGATCAGGCCGCTGAATATTGGAAACAAGC TATAGCCCTTACCCCTGGTAATTATATTGAAGCACAGAATTGGTTGAAGATCACAGGACGTTTTGAATAAGAACATTCTGTTTATTATTTATATTTTTTA TATTTCTTTTTATCTATTCTATTTTGATATTTGATCTATTTATTATATATTTAATTTGTTATAATATATTTAATTTGTTATAATTTATTGTTTGTTGTCC CCATCAGTCAAATAAAAAATATCGTTTATCGAGGAATAACTCATCAAAGAATTTCATTATATCCCTTCTAAGTAAGGCCGAAAGTTCTATCTAGGAACTT TCTAATTAAAATCTGAATACGCTAGTTAGGTTGCACAAAAAAA BLAST |
| Tissue | pods |
| Gene name | LI_gene_180137; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_515014
| Blastp | - |
|---|---|
| Blastx | Photosystem I assembly protein Ycf3 from Populus with 98.41% of identity |
| Eggnog | - |
| Kegg | Link to kegg annotations (Poptr_cp023) |
| CantataDB | Link to cantataDB annotations (CNT0002248) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (YP_008963606.1) |
| Pfam | - |
| Rfam | tRNA (RF00005) |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |