Id Trinity | TRINITY_DN50807_c3_g3_i8 |
---|---|
Name Transcript | Ll_transcript_515032 |
Sequence | AGTTCAAAAATATCTCTAGAAATGGAATAAAAAATTGTTGCTAGGATTTTAATATGCGTAGATGTAGAATTTTAATTAAACTGAAATTATTGATCATTAC ATAGAATTCAATTAAGATATTGTATGAAAGTATGATTAGATTTCTTCAATTTTTTTATTTCAGAATGAAAATATTTTTATTTTTAACTGGCTAAGTTCAA ATCAAAGAAGTCTTTTTTTTGGGGGGGTCTGACCTTATTTGACTTATTTTTTTTTAGTATTCCTAATTTATTACATTAATTAATATCTAAAAATTATAAT AAAAATAAAATTATACATATATATATAATATATTCATATCTATCTAATACAATAAAAATAAGAATTCTATAAAAAATCAAAAATACAATGAATTTTCTTA AAGAACAAAATGTTTGTTATGCTTAATATCTTTAGTTTGGTCTGTATTTGTATTCACTCTACCTTTTATTCAAGTAGTTTTTTCTTGGCGAAATTACCCG AAGCCTACGCTTTTTTAAATCCAATTGTCGATATTATGCCAGTAATACCTCTATTTTTTTTTCTCTTAGCTTTTGTTTGGCAAGCTGCTGTAAGTTTTCG ATGAGATCTTTAATTTGAATAATGTCCTAACAAAAAAAAAAAATTAGAATTTAATTTATTGGAAAACAATAATTTGAACATTTTAAAAATTTATAAGATC AGATAAGTCTTACAGGGTGAATCCTCGATTCAAATATTGATATTGAGATTTTTTGATAGACAATAAAAATCTGGACCATCTCATTATTTCCCGATTCTTA CGTTTTTTCTATTGAGAAATCCCAATCTGATTTTATTATTACGATTATTTTATTCGATTTGAGTCCACCACCAATACCTAGATTGTGGATATGAAATAAA ATTTTTGGTAATAGTAATAAAGGGATCGACTCTTACTACAAATAAATTTTCTAATTTTTTCTATTTCCTCGAAAACACTTACTTTCTTATCTTAGAAGAA ACTTAATGTGTAATATAAGAGAATCTATTCTCTTTCTCTGTCGTTTTTTTTTTAATTATTCTTGGAGATTTTGTAATGCTTACTCTAAAACTATTTGTTT ATACGGTAGTTATATTCTTTGTTTCTCTTTTCATCTTCGGATTCCTATCTAATGACCCTGGACGTAATCCAGGACGTGAAGAATAAAAAAAATATTTTTG GTTTTCTGTGTTTTGTTTTTCTTGCTTGTGCCGGATCTGTGGATTTTTAAATATTTTTTTATTAGGGTTTTATCTATTGTACATTTTAAACTAGTAAATA AAAGAGTAAGTAAAAAAAATAAAACAAAAGAAGATCCATAAGGTCAAAAGAACAAAATACCAAATAATCAATGGAAACGGAAAGAGAGGGATTCGAACCC TCGGTAAACAAAAAGTCTACATAGCAGTTCCAATGCTACGCCTTGAACCACTCGGCCATCTTTCCCTCCTACATAATATAATGATTATGACCCAGAAACC GGGTGAATAGTGAATCATTTATATTCCCATTTTTTTGCATAGAGGCGCATACAATCAATTCGAACTAAAAAAATAGAAAAAAATGTAGCAAAAAAAATCT TCTTCGAAGCTGTAGGATAAACCCATTTTTTTATTAATGAGTCTGTTTTTACGTTATTTCGTACAGTATTTACAATTCCTTTGTTTGTGGGATTATTTTC TTTTCTCGCGCGATAAAAAAGTAAATTATAGAATGGATTGCTACCTATGCCCAGATCTCGGATAAATGGAAATTTTATTGATAAGACCTTTTCAATTGTA GCCAATATCTTATTACGAATAATTCCGACAACTTCAGGAGAAAAAGAGGCATTCACTTATTACAGAGATGGTGCGATTTGATTATCTTTTTTTTTTATTT ACATTTAGCGATCCCAGTTTTAGGAAAAAAGACACATTTTTCGGAGAGAAAGAAAGAAAAAAATTGAAAAAACCTACGCTTGCTGAAGGTGAAGTTTGTA AATAAAACAATTAAATCCTTCTGTCGTGTATCCCCGATTAATGCAGCCTCATATACTTCTATTTTAGGTTTATAGTATTAAGCGAAAGGTTATACCTATA CCTAATGGAGTTAGGTCAACCCTACTCCACTAGTACTAATAGGCGGCCTGGGGGAAGAAGCACTACGCTTAGGAATCAACAACACGAAAGAAAACTTTGT AAAACTCAAATATCTTTCCTTACGGGATCGGAACTAACAAAAGAATGGTTGGGACAACAAACATCCATCTCGTTCGTATTTTGGATACCCGTATAACCAT CCAAGACTGTTGGAGTGACTAATTCCAAGAAATTAAGCGGCGTTGAGGACAAAGAAATTGTTGGAGTTACCCTTTCTTATCCAGTACCAACATACTTGAT GTTAAGAACAGATCTTTTACAGGAAGGTTGGCTAGAGATTTCTTGTAAAAACACTAGCCCCGCTCAGTTGATAATGAGAATACTGCAATCTTTTTTGATT CTATGTATTTTTTTATCATTATACACATAAAGGAGGAGCCGTATGAGATGAAAATCTTACGTACGGTTCTGGAACGGAGATTCTTTGAACTGAATGACGA CCGTAACGGATGTCGGCTCAATCGGAAGGAAATTATGCGGAAGCTTTACAGAATTATTATGAGGCTATGCGACTGGAAATTGATCCCTATGATCGAAGTT ATATACTTTATAACATAGGCCTTATCCACACGAGTAACGGAGAACATACGAAAGCTTTGGAATATTATTTTAGGGCACTCGAACGAAACCCCTTCCTACC CCAAGCTTTTAATAATATGGCCGTGATCTGTCATTACCGCGGAGAACAGGCCATTCGACAGGGATATTCGGAAATTGCGGAGGCTTGGTTTGATCAGGCC GCTGAATATTGGAAACAAGCTATAGCCCTTACCCCTGGTAATTATATTGAAGCACAGAATTGGTTGAAGATCACAGGACGTTTTGAATAAGAACATTCTG TTTATTATTTATATTTTTTATATTTCTTTTTATCTATTCTATTTTGATATTTGATCTATTTATTATATATTTAATTTGTTATAATATATTTAATTTGTTA TAATTTATTGTTTGTTGTCCCCATCAGTCAAATAAAAAATATCGTTTATCGAGGAATAACTCATCAAAGAATTTCATTATATCCCTTCTAAGTAAGGCCG AAAGTTCTATCTAGGAACTTTCTAATTAAAATCTGAATACGCTAGTTAGGTTGCACAAAAAAA BLAST |
Tissue | pods |
Gene name | LI_gene_180137; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_515032
Blastp | - |
---|---|
Blastx | Photosystem I assembly protein Ycf3 from Populus with 98.41% of identity |
Eggnog | - |
Kegg | Link to kegg annotations (Poptr_cp023) |
CantataDB | Link to cantataDB annotations (CNT0002248) |
Mirbase | - |
Ncbi protein | Link to NCBI protein (YP_008963606.1) |
Pfam | - |
Rfam | tRNA (RF00005) |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |