Id Trinity | TRINITY_DN50836_c1_g1_i3 |
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Name Transcript | Ll_transcript_514681 |
Sequence | CTGTTTCTTGTGTTAATCAAACGCAATTCGCTCTTCAAATTCAAAACCCCTTCTTTATCCTCCATTGTGTTCTTTTTTTGTGAGGCATATATACAGAAAA GAGATGGATGAGTGTTAGTTTCATTTCCCACTGAATGGAAACAACACTCACTCACTTCCTCTATGGCCTCCTTCCATCATCACCAAATAACTCTCACATT CCCTCCTTTTCATTCTCAACACATAACAACACTACCAATGCACTAACCATAATTCCAAACGCAACCAAAACCAAAACCCAAACTCAAACAACACTAATCA ATGAACCAATTACCACACTTCATCACCAAAACACACACCCTTTGGGTTCAAACCATCTTGGAACAACCGTTTCCACGTGGCTACGTCATAGCATGAAGGC AATGGCATCAGATTTAGCTTCAGCCGAGTTACGAACCGAGTTTCAATTCTCCGAGTTGAGGCAAAGGATGAGACCGGGTTTGAGTTTCGTTATCGAAGCT CAACCTTATCTTAAAGCTGTTCCTTTGCCTCTTGGATTTGAAGTTCCTTGTTTGAAGGTTTGCACTCATTTTCCGACACTGTTTTGTTATTTTCGGAGAG AACTTCGTTGTGTTCTCAGTGAGTTGCAGAGTAAGGCGTTGCTTCGGGATTGGCGCCAAACTCACTCGTGGAAATTGGTTAAAGAGATTGCTAATTCAGA TCAGCATAGGGCAGTTGCAAGAAAGACAGTACAGCCGGAGATTGTCCAAGGGGTTTTAGGAATGGACTTGGAGAAGGTGAAGGCAATGCAGCAGAGGATT GATGAATTCACCAGCAGCATGTCTGAGCTGCTATGGATTGAAAGGGATTCTGAATTGGAGTACACTCAGGAGGAATTGGATGCAGTTCCTAAACCATATG GCACTTCTGAATCATCAAAGCCGATTGAGTTCTTGGTTAGCCATAGCCAGCCTCAGCAAGAACTCTGTGACACCATTTGCAATTTAACTGCCATCAGTAC CTCTAAAGGACTTGAGGGAATGCATTCAGTGTTATTCAAGGTTGAAGGGAACCATCGGCTACCGCCTACTACTCTTTCACCAGGAGACATGGTTTGTGTA CGAACCTGTGACAGAAAGGGTGCAGTTACAACTGCTTGCATGCAAGGATTTGTTGACAATCTTGGAGATGATGGCTGTACTATTAGTGTTGCTTTAGAGT CACTTCATGGCGATCCTACATTTTCTAAACTATTTGGGAAGAGTGTGCGCATTGACCGTTTTCAAGGACTGGCTGATGCTCTTACCTATGAGGTCATTTA AATCTATCATGTTACACTGGCAAAACATTTAATTTGGTCCAAGACACATTTGTGTAAAAATTATGTACCGATGACTAACTAAGAAGTTTTGTGTACACAC ACTTGTGTTTAACCGAGAACAAATTAAATTCTGTGATTTCTACCAAAAGGAAAAAGAAAAGTATATGGTCAAGTAGTAGTTAGTTGACTTGAGTTATGCA TTGCTATTTGATCTAGAAGGTGAACAAGTCTGATAATGATTAGTGTATTTACTGTATGGTATCAATATGCATATGCCTTTCCTAACCCTTGAAACGGAAC TATTAAAAACCAATTTGTTACTGCTTGAAAATTGATATTACAACTTACAAGATGACAATTGACAAAATAGAAAAACTGTGGCCTAAAGTTTCAGTGTAAA ACATCAAATTTTACCACTTTAAGATGGTGCTAGTGTTTCAATGCTAACTAACTGCAGCCAGAATTTGAGCACTTCTTACATCACATTAGCTTTTCTCACT TTGAATTTGTGACCATTGACATTGATCAATTCTATTTTTTCTACTTTATATTGTCTCTGCTTTATTTTAATTGTCACATTATCGTAATGCACTAAAATTA AGGTAGTTATTGCTTAGTGTCTATGAGGTCAATGATTCAAATACTGGAAGCAGCCTCTTCACTCACGGAGTAAGAGACCTCACTAGCTGAGAGTCTCATG CATTTTTGCCGCGATCAAATGTTCCTCATGGTTACATTTTTCTTCCACCTGCTACAAAAAGGATGGATATGCTGATATGGTTAAAAGTGTTAAGTGTTAA CTACCCAAAACCCACCGCCTAAGTTCTCTGGTAAAAAGATAGTTCTATTTCTATTAACCGGTTTACACAGACAAGCATAATTAGACTATGATGTTTCTCT GTTATTAATTTCATTGATATTTTACTCCTTCATATAGCTCACTGATTACATATGTGTGGATACATCCTTTAATAAGCTTCTTATTAATTTTTTCAGCGCA ACTGTGAAGCCTTAATTCTGCTTCAGAAGAATGGTTTGTGCAAAAACAATCCTTCAATTTCTATTGTGGCTACACTATTTGGAGAGAGAGAAGATGTTGA ATGGCTTGAGAAGAATCATGTGGTTGACTGGGAAGAAAAAAAATTGAATGGACTATTAGGAAATGAAACCATTGATGATTCTCAGCAGAGAACAATTGCT CTGGGTTTGAATAAGAAGAGGCCTGTGTTGGTTATCCAAGGACCTCCTGGTACTGGCAAGACTGGTATACTCAAGCATCTTATAGCGTGTGCTGTTCAGC AAGGAGAAAGGGTTCTTGTTACAGCACCTACTAATGCAGCTGTTGACAACATGGTTGAAAAGCTTTCAAATGTTGGATTAAATATTGTACGGGTTGGGAA TCCAGCTCGTATATCAAAAACTGTGTCTTCAAAGTCTTTGGGAGATATTGTGAATGCTAAGCTTGCACCTTTTCGAGAAGAGTGTGAGAGGAAGAAGTCG GATCTAAGGAAAGATCTAAGTCATTGTTTAAAGGATGACTCACTAGCTGCGGGCATACGCCAACTTCTGAAACAGCTAAGAAGCTCGTTTAAGAAAAAGG AAAAGCAGACTATTAGTGAAGTTCTATCTAGTGCTCAGGTTGTGCTTGCTACTAATACTGGAGCAGCTGATCCTTTGATTCGAAAGCTAGATGCTTTTGA CTTGGTTGTCATAGACGAAGCTGGACAGGCAATTGAACCCTCTTGCTGGATTCCTATATTGCAGGGAAAGCGTTGTATTCTTACTGGTGACCAATGCCAA CTTGCTCCTGTCATATTATCTAGAAAGGCCTTAGAAGGTGGTTTAGGAATATCTTTACTGGAGAGAGCTACAACTTTGCATGAAGGGGTTCTCACCACCA GGTTAACAACACAATACCGTATGAATGATGCAATTGCTAGCTGGGCCTCAAAGGAGATGTATGGAGGATTGTTGAAATCTTCTGAGACTGTCTTTTCTCA TCTTCTTGTAGACTCTCCTTTTGTTAAGCGTACATGGATAACACAATGCCCTCTACTATTGCTTGATACTAGAATGCCATATGGAATTCTGTCAGTTGGT TGTGAAGAGCGTCTAGACCCAGCTGGGACAGGCTCACTTTATAATGAAGGAGAAGCCGATATAGTTCTGCAGCATGTATTTTCCTTAATATACTCTGGTG TTAACCCAACTGCCATTGTAGTACAATCCCCTTATGTTGCTCAAGTACAACTTTTGAGGGATATGCTTGATGAAATCCCAGAGGCTGCAGGTACTGTGGT TGCAACTATTGATAGCTTTCAAGGTCAGGAAGCTGATGCAGTAATTTTATCCATGGTACGATCGAACACATTAGGAGCTGTTGGGTTCCTTGGGGATAGC AGAAGAATCAATGTTGCCATCACAAGAGCACGCAAGCATGTAGCTGTGGTCTGTGACAGCTCAACCATATGCCAAAACACCTTCCTCGCAAGACTCGTGC GTCATATACGACACTTTGGTAGGGTGAAGCATGTCGAACCAGGTAGTTTTGGAGGGTCTGGACTTGAGATGGGTCCACTATTACCTTCAATTGATTAGTG TAGCAACAGCAGTATGAATCAAATTTTAAACATGGGGTAGCAATTGCTTATATGATTGTCTTCCTTTCTTGTTTCTATTTTCTTATTGATTCACAAATAG GCTGGCCTTTCAAGTCATCAAAACTTTACAATACAAAGCAATTCATGAAATTCAACATTTGTATATGAAATACTACTCATGCATGGAAATTATGAAAGAA AAGTTTATTCAATCACCCAAACAAAAGTTGTATTTAGTAGCATCATTTAAATTGCAAATCCCAA BLAST |
Tissue | pods |
Gene name | LI_gene_180355; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_514681
Blastp | DNA-binding protein SMUBP-2 from Rattus with 42.43% of identity |
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Blastx | DNA-binding protein SMUBP-2 from Rattus with 43.35% of identity |
Eggnog | Helicase(COG1112) |
Kegg | Link to kegg annotations (29532) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019449927.1) |
Pfam | AAA domain (PF13086.5) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |