| Id Trinity | TRINITY_DN50836_c1_g1_i6 |
|---|---|
| Name Transcript | Ll_transcript_514685 |
| Sequence | CGCCTCAAACCTACTTCGCGGTTCAAATTCAAAACACCTTCTTAGTCCACTCTAAAATGATAACTATCTTCTAAATTCTAATCTCATTTCCCTCATTAAA AAAAATATCTATCTCTACTTATTATATAATAATATATCCTCATACATGTTTTTTTCATTTACTTCTAGTTTTGTTTCCACTCAATGGAAACAACACTCAC TTGTATCCTCTGCGGTCGAATTCCGGCACCACGATACAATAATAACAATCATAATTCTTATTCTCATGCTCCTTTCTTTTGCAATACTACTAATGCTACC ATCATCAAAACCAGCCTTCCGGTCAACAACAAACCGAGAAGAAGAAGGATTCGAATAAAAACACCTTCGCAGCCGTTACCATTGATCAAAGAGTCGAATG AGATAAACAATCATGAAAACGGAGACCCATTAGGATGGAAAGACCTTGGAAAAAGCGTTGTGAAGTGGATTCGTCATAGTATGAGGGCTATGGCATCTGA TTTGGCTTCAGCAGAGTTACAAGGGGAGTTAGAATTCTCGGAATTGAGGCAGAGAATGGGACCTGGGCTTAGTTTTGTTATCGAAGCGCAGCCTTATTTG AATGCTGTTCCTTTGCCTCTTGGACTTGAAGTTGTTTGCTTGAAGGCCTGCACTCACTATCCGACTTTGTTTGATCATTTTCAGAGGGAACTCCGCGAAG TTCTCAATGAATTGCAGAGTAAGTCCTTGGTTCAGGATTGGCGCCGGACCGAGTCGTGGAAACTGCTTAAGGATCTTGCCAATTCAGCTCAACATCGGGC GGTTGCAAGAAAGACAGTACAGCCGAAGATCGTCCAAGGCGTTTTAGGAATGGACTTAGAAAAGGTGAAGGCAATGCAGCAGAGGATTGATGAGTTCACC AGCAACATGTCGGAGCTGCTCTGGATTGAAAGGGATTCTGAATTGGAGTACACTCAGGAGGAATTGGATGCTGTTCCTAAACCAGATGATACTTCTGATT CGTCGAAGCCGATCGAGTTCTTGGTTAGCCATAGCCAGCCTCAGCAAGAACTCTGTGACACCATCTGTAATTTAACTGCCATCAGTACCTCTACAGGACT TGGGGGAATGCATTCAGTGTTATTCAAGGTAGAAGGGAACCATCGGCTACCACCTACTACTCTTTCACCAGGAGACATGGTTTGTGTGAGAACATGTGAC AGCAAGGGTGCAGTTACAGCTGCTTGTATGCAAGGATTTGTTGACAATCTTGGAGATGATGGGTGTAGTATTAGTGTTGGCTTAGAGTCACGCCATGGCG ATCCTACATTTTCGAAACTATTCGGGAAGAGTGTGCGCATTGATCGTTTTCAAGGACTGGCTGATACTCTTACCTATGAGCGCAACTGTGAAGCCTTAAT GCTGCTTCAGAAGAATGGTTTGCGCAAGAAGAGTCCTTCAATATTTGTTGTGGCTACACTGTTTGGAGACAGAGAAGATGTTACACAGCTTGAGAATAAT CATTTGGTTGACTGGGAAGAAGAAAATTTGAATGGACTATTAGGAAACGAAACCTTCGATGATTCTCAGCGAAGAACAATTGCTCTGGGTTTGAATAAGA AGAGGCCGGTGTTGGTTATCCAAGGGCCTCCTGGTACTGGAAAGACTGGTATACTCAAGCATCTTATAGTATGTGCTGTTCAGCAAGGAGAAAGGGTTCT TGTTACAGCACCTACTAATGCAGCTGTTGACAACATGGTTGAAAAGCTTTCAAATGTTGGATTAAATATTGTACGGGTTGGGAATCCAGCTCGTATATCA AAAACTGTGTCTTCAAAGTCTTTGGGAGATATTGTGAATGCTAAGCTTGCACCTTTTCGAGAAGAGTGTGAGAGGAAGAAGTCGGATCTAAGGAAAGATC TAAGTCATTGTTTAAAGGATGACTCACTAGCTGCGGGCATACGCCAACTTCTGAAACAGCTAAGAAGCTCGTTTAAGAAAAAGGAAAAGCAGACTATTAG TGAAGTTCTATCTAGTGCTCAGGTTGTGCTTGCTACTAATACTGGAGCAGCTGATCCTTTGATTCGAAAGCTAGATGCTTTTGACTTGGTTGTCATAGAC GAAGCTGGACAGGCAATTGAACCCTCTTGCTGGATTCCTATATTGCAGGGAAAGCGTTGTATTCTTACTGGTGACCAATGCCAACTTGCTCCTGTCATAT TATCTAGAAAGGCCTTAGAAGGTGGTTTAGGAATATCTTTACTGGAGAGAGCTACAACTTTGCATGAAGGGGTTCTCACCACCAGGTTAACAACACAATA CCGTATGAATGATGCAATTGCTAGCTGGGCCTCAAAGGAGATGTATGGAGGATTGTTGAAATCTTCTGAGACTGTCTTTTCTCATCTTCTTGTAGACTCT CCTTTTGTTAAGCGTACATGGATAACACAATGCCCTCTACTATTGCTTGATACTAGAATGCCATATGGAATTCTGTCAGTTGGTTGTGAAGAGCGTCTAG ACCCAGCTGGGACAGGCTCACTTTATAATGAAGGAGAAGCCGATATAGTTCTGCAGCATGTATTTTCCTTAATATACTCTGGTGTTAACCCAACTGCCAT TGTAGTACAATCCCCTTATGTTGCTCAAGTACAACTTTTGAGGGATATGCTTGATGAAATCCCAGAGGCTGCAGGTACTGTGGTTGCAACTATTGATAGC TTTCAAGGTCAGGAAGCTGATGCAGTAATTTTATCCATGGTACGATCGAACACATTAGGAGCTGTTGGGTTCCTTGGGGATAGCAGAAGAATCAATGTTG CCATCACAAGAGCACGCAAGCATGTAGCTGTGGTCTGTGACAGCTCAACCATATGCCAAAACACCTTCCTCGCAAGACTCGTGCGTCATATACGACACTT TGGTAGGGTGAAGCATGTCGAACCAGGTAGTTTTGGAGGGTCTGGACTTGAGATGGGTCCACTATTACCTTCAATTGATTAGTGTAGCAACAGCAGTATG AATCAAATTTTAAACATGGGGTAGCAATTGCTTATATGATTGTCTTCCTTTCTTGTTTCTATTTTCTTATTGATTCACAAATAGGCTGGCCTTTCAAGTC ATCAAAACTTTACAATACAAAGCAATTCATGAAATTCAACATTTGTATATGAAATACTACTCATGCATGGAAATTATGAAAGAAAAGTTTATTCAATCAC CCAAACAAAAGTTGTATTTAGTAGCATCATTTAAATTGCAAATCCCAA BLAST |
| Tissue | pods |
| Gene name | LI_gene_180355; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_514685
| Blastp | DNA-binding protein SMUBP-2 from Mesocricetus with 35.26% of identity |
|---|---|
| Blastx | DNA-binding protein SMUBP-2 from Mesocricetus with 35.12% of identity |
| Eggnog | - |
| Kegg | - |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019413885.1) |
| Pfam | AAA domain (PF13086.5) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |