| Id Trinity | TRINITY_DN50846_c2_g1_i5 |
|---|---|
| Name Transcript | Ll_transcript_516089 |
| Sequence | GGGTGTTGGTAAAATGATTCTGAAGCTTATGCAGGGGTTTTTTGGGACCACTTCAGAAGTTTCTGAACCAGATGGCTTGACCAAAAAGGGAAAGACAACT AAAGGAACCAAGCGCTATATGCCTCAGAGGAACTCTGTAGCATACGCACTGTTGATAACCCTTTACAGGGGAACTTCAAATGGAAATGAATTTATGCGTA AACAGGAACTTATCGACGCTGCTGAAGCTAGTGGGCTGTCTCGAGTGCCAATTCTCACATTTTGAATGTTCAGGCCAGAAAAAGGGAAAGGGAAGCCTGG CCATTTTGGAAGTTCTCCACGGGAATGGTATAGTGGATGGAGCTGCATGAAGACACTGGTAACTAAGGGATTAGTTGTAAGATCAAGTTGTCCAGCAAAG TATATGCTAACTCAAGAAGGTAAGGAAGCAGCATGTGACTGTCTTAAAAGATCTGGAATGACAGAATCTCTGGAGAAGTCAGTTTCTGTTGAAATTTCAT CTTATATCGATAAACAGAACTCCTTAGATAAGGAACTGGAGGGTCATGATTCGGAATCAGAAGTGATGTCCCCATTGACCCAGCAAAAGAAGCCAATGGG TGTTCCTCTTGATTCCCTTGAGAGGTTTACAAGAATGGGTTACTCCAAGGAACAAATTGTTAGTGCTTTCACTGAAGTTTCCAGAAGCTATCCAAATAAA GATGTCTCATCTCTGTGGCCAGCTGTTTTATGTCATCTTCGAGGGGAGCAAGTCTATGGTCCACAGCCCGAATTGCAAACTAATATAAATAATTGCCATA TGATAAGTGGTTCCAGTGACCTCATTGGAAACGAGAGAAGAACTGTGAGTTCATCCCGTGGTGGGCATGTGTCAAATTCCCGTTCTCTTGATATTCCATC GTTTCCCTTGAGAGCTTGCTCATCAAATGCAGATCCCTTGGAAAAGCCGAACAAAGACGAGCTTGAATCAAAGATGAACATTTTAAGTGTTCCACCATTG AGCTTGGGGGATAGATTTGAGGATGTCTACGAAGTGATTTTAATTTTGGATGATCGGGAGCAGTTTGCCACTCAGGGATCAAGAGCTAGGAAAATTATTG AGAATATCCGCCGCGAATTCAAAATTCAAATAGAGGTTCGGCGATTACCAGTTGGAGATGGGATTTGGATAGCGCGCCATAAAACTCTCGATACTGAATA TGTATTGGATTTTATTGTTGAGAGGAAACATATTGATGATTTACGCAGTTCAATCAGGGATAACCGCTACAAGGATCAAAAAATAAGACTTCTGAGGTGT GGACTGAAGAAGCTGATATATCTTGTGGAAGGTGACCCAAATGCTTCTGAAGCTGCCGAAAGCATAAAAACTGCTTGTTTTACAACAGAGATTCTAGAGG GATTTGATGTGCAGAGAACAAGTGGCTTGGGTGATACCCTAAGGAAGTACGGTTATCTTACCCAATCAATTTTCCAATATTACAAGTCAGGAGTTTTTGA AGACCATCTCAAATTCTCTGGGACATGTCCTCCCTTTAAAAAATTTATTAGACAGTGCCAAGACATGGAAAAAATGACAGTTAGTGATGTATTTGCCATC CAGCTTATGCAGGTCCCACAGGTTACTGAGGAAGTTGCCATGAATGTGTTGGATTTGTACCCTACACTTATGTCTCTTGCTCATGCCTACTCACAACTTG ATGGCGATGCTCGTGCCCAGGAGGAGATGCTTCGAACTCGGAGTAACGATGTGATCAATGCAGTTGCCAGTAGGAATATTTTCCACTTTGTTTGGGGCAA CTGACTTGTATTTCCCCCTCAAAGATGGGTTTTCAGATGTGAATTCACTAAGCATAGGGTGACAACAATGTTCTTTTTTTTTTACTTAAGCAACTTGTAG TTGTTGTATATGTATATAAAATTAAGTATGATTTACAGTAATGCATAGTGACAAGCAATAAAAAAAATACTTTTT BLAST |
| Tissue | pods |
| Gene name | LI_gene_180430; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_516089
| Blastp | Crossover junction endonuclease MUS81 from Arabidopsis with 56.21% of identity |
|---|---|
| Blastx | Crossover junction endonuclease MUS81 from Arabidopsis with 56.33% of identity |
| Eggnog | Excision repair cross-complementing rodent repair deficiency, complementation group 4(COG1948) |
| Kegg | Link to kegg annotations (AT4G30870) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019427613.1) |
| Pfam | ERCC4 domain (PF02732.14) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |