| Id Trinity | TRINITY_DN50855_c1_g2_i1 |
|---|---|
| Name Transcript | Ll_transcript_516056 |
| Sequence | TTTTTCTTTTTTTTTTTTACAAAGGTAAATACGTATTTTTCGCTTCGAATATTTGATTATCGATCGCATTCGCAAAATCTGATAGTGTTATGAGAATTCT AGGGATTCTATGGAGAATTCGAAGAATTGAAGAAGAAAATGCAGGAATTTCAATGAATGAATTGAAATTCGAGATGTGTATTGATGGAGAAGAGAAGATT ACAAGAGAATTCTGAGTAAAATGATTGATTGAACAATTCAAAGCAACTAACTAACTATTTATACTAAAAATAGAAATGGCGGGAAAAACAGTTAGACTTT GAATTGGAAAGTTTCTAAAAAAGGCAAATTACAAATTCTGCCTTAACAATACTTCCCCCTTAAGCAACCTTGACCTCAAGGTTCAAACAATGGAAACTTC TTCTTTAGCTCATACAAAACCTCCCATGTAGCATCCTCTTGTGGTTGATTCTTCCATTTAACTAAAACTTTGGTCATTGCCTTGCCTTGCTTCTTCACAA AGGTTCTGGACAAAATGGATTCAGGTTCCTTAACCTGCACAGGGACAGCAGCATCAGTAGGCAAGGAAGGGGAACTCAACTCAGTGCCCACATACTTTTT CAGTTGAGAGACATGAAACACATCATGGATTTGTGCAGAAGAAGGCAATTTCAACTTGTATGCCACTGCTCCAACTTTGCTAAGCACAAGAAAGGGTCCA AAAAACTTTGGAGCTAACTTATCATTGCTTCTCTGGGCTGCAGATTGCTGCCTATATGAGTGAAGCTTGAGGAAGACAAGGTCACCCACTTGGAACTCTC TATCCACCCTGTGCCTATCAGCATGTTGCTTCATACGATTTTGGGCTCTTAGCAAGTGAAATTTCAGCACCTTCAGCATTTCTTCACGACTTGCTAAGCT TCTGTCCACCAACTCAATTTTTGATTCCCCTGGCAAATATGGCAAATAAGCAGGAGCAGGTTGTCCATAGACAATTTCATAGGGAGTGGCTTTAATAGAA GTGTGGTAGGTGGTGTTGTACCACCATTCAGCCAAAGGAATCCACTTGGACCATTGCTGAGGTTTATCTGCACACATGCACCTGAGATAAGTCTCCAAAC ATCTATTCACCACTTCAGTTTGGCCATCTGATTGTGGATGATAAGCAGTGGAGAGGTTGAGTTGTACTCCCTGATAAGCCATCAATTCTTGCCAAAAATT GCTTATAAAAATTGGATCTCTATCACTTGTGATGGATTCAGGAAATCCATGTAACCTGAATACATGGTCTAAGAAGGTTTGAGCTACACTGGCAGCTGTA TAAGGGTGAGACAGAGAGATGAAATGGGCTGCCTTGCTCAGCCTATCCACTATCACAAAGATGACTTGCTTACCAAAAGAAGTAGGTAAACCTTCAATGA AATCCATGGATATGTGTTGCCAAACCAGGCCTGGAATAGGCAGAGGTTGTAGGAGTCCAGGATAAGAAGTTGTTTCATACTTACATCTTTGGCATACCTC ACAATGTGTGATGAATGAATGCACATCTTTACTCATACCCTTCCAATGCACTAGAGTTTTGATTCTTTGCAAAGTAGCTTGTCTGCCAGAATGGCCACTT GCAGAAGCAGTATGCATCCAATTAAGCAATTCTTGTCTCAGCACCATATCCCTTCCTACTACCAGCTTTCCTTTCCTTCTCAACTCAGAACCATTCCAAT GGTGGTGTTTGTGAGTAGTAGGATCTTTAAGCCACTGTTGAATCAGTTTCTGCACTTCTGAATCAGCTATGCAGGATTGCTTAATTCTGTCCACCAAATC AGACTCCAGTTGGTGTACTAATAGTGCAGAGTATATAGGAGTGTCATGCTCTACTCTGGACAAAGCATCAGCAGCTATATTGGTTCTACCCTCCTTGTAC TCTATAGAAAAATCAAACTCCATTAGCTTGACTAACCATTTCTGTTGGAAGGCAGTGGAGAGTCTTTGATCCAAAATATATTTAAGGCTTCTATGATCTG TTTTGATCACAAAATGCCTATTCAACAAGTAGTGCCTCCACTTTTGGACTGCAAATACCACAGCTAGGAGTTCCTTCTCATAAGTAGAGAGAGCTTGTTG TTGCTGATTGAGTGTTCTACTTATGAAAGACAAAGGATGATGATCCTGCATCAAGACTGCACCAATACCATAACCAGATGCATCCACTTCCAACACAAAC TGTTTTGAAAAATCAGGTAAAGCCAGCACTGGAGCCTTAAGAAGGGCTTCCTTGAGTTGCAAGAAAGAAGTCTTGGCACCAGTGGTCCATTGAAAATTAT CCTTCTTTAACATCTCAGTCAATGGCTTAGCCATGCTGCCATAACCCTTAACAAACCTTCTATAATAACCAGTAAGACCCAAGAAACCTCTCAATTGTTT GAGAGTTTGAGGCATGGGCCAAACAGCAACAGCTTGGACTTTGAGAGGATCAGTAGCAACTCCTTCTCTGGAAATAAAGTGGCCTAGATACTCCACCCTA GGAACTCCAAAATAGCATTTAGATTGCTTGGCAAACAGGTTATGCAATCTCATTGTACTCAAAACCTGAGTCAAGTGATGAAGGTGGTCCTCTTCAGTGC TGCTATAGACCAATATATCATCAAAAAAGACCAATAAGAATTTCCTCAAAAACTCCTTAAACACATGGTTCATGAGGCTCTGAAATGTGGCAGGTGCATT TGTGAGGCCAAAGGGCATGACCACATATTCATAATGGCCACCATGGGTTTTAAAGGCAGTCTTGTGTATATCTTTGGAATCCATTTTCACTTGATGATAA CCAGACCTAAGATCTATCTTGGAAAAGATAGTAGATCCATTCAGCTCATCCATGAGATCCTCCACCAAAGGGATAGGGAACCTATCCTTCACAGTCCCCT TATTAAGCTCCCTATAATCAACACAAAGTCTCCAAGACCCATCCTTCTTTCCTACCAACACCACAGGGCTTGCATAGGGACTATTACTGTTCTGCACAAA GCCAGAATCAATCAAGTCCTGAACCAACTTGTCAATTATGGTTTTCTGATTGCCAGCATACCTGTAGGGTCTTTTATTCACTGGATTAGTACCCTGCAGC AAGGGAATTTGGTGATCAAAGCCTGCTCTGGTAGGAGGTAATTGTTTAGGTTCCTCAAAAACATCCCTAAACTCTACCAATAAGGCTGCAATGGTAGATG GCATTACTACAGGATCAGCATGAGTAGTAAGAGTCTGCAACAAACAGCCCTCAGCCTCCCCTACCTGAATCATGGATAAATGAACACCATTTTGCAAGGT CTTATCCACATGTTTAGCCTTCACCCCCTTGATACCAACCTGATTGGATCCTCTTAACACATGTCTTCTGCCTTGGACTTTAAACTCCATTCTCAATTGG TTAAAATTCCAAGTGATGTCCCCCAATGTAATCAGCCACTCAATTCCTAAGACCATGTCACAGCATCCCAATGGAATAAGCATCATATCAGTCTGGAATT CATGATTCTGCAGTGTCCAATGGAAATTCTTAACTATGGAAGAAATTTCCAACTTATTGCCATCAGCAACTGTCACCATGATTGTGTTCAAAGAATCCAC TTTGCAGCCCAACCTCTTAGCCATATGGACATCCAGAAAGTTGTGTGTGCTACCACTATCAATCAAAATGTGCAGAGGTTTCTTCTTATAACTCCCTGTC ACCCTCATAGTTCTGAAACTAGCAACACCAGTCAAAGCATTCACAGAAATCTGAGGTTCACTGATTTCAGTGCTATGGTGATCTTCCTCATCCAGCCCTT CAACTTCATTATCATCCAATTCTACAAAATGCAGTTGAACTTTCTTGTGTGTGAGACTATGCTCAGGGCTATAAGGTTCATCACAGAAGTAGCAAAGGCC TTTACTTCTTCTCTCAGTGATGAAAGCAGGGGACAGAGTCCTCATAGGCCTAGGTTTTGGTTTCACAGAATCCACCACATTGCTCTCCACTGACATAGAT CTGTTAGTGCTAGCTGACCTGGCTGGTAACCCAGGTTTACTAAGTTTGTTGTGCAAAACAGAAGGTAAACCTTGAGTATTAGCAGACTCATACAATTGTG CCAAGGTGAATGCCTTCATCACATTTGAAGGTTGAAACATCCTCACTAACATGTGAATGTCATGCTTCAAACCACCAAGGAAACAGCTCAAGGTATGCTC AGGAGAGAGATCCAAACGAGTAATGATGGCATCAAACTCAGCATAATAATCACTGACTGACCCTTGCTGCCTCAATTTCATTAATTCCACCATAGGATCT TCACAAACAGCACCAAATCGTTCAAGTAGTAAAGCCACATATTCTTCCCAACTCAAGCCTTGGAAATTCTTGAAGGATTTCAAACAGGCATGATGCCATT GCAATGCCCTTCCTTCTAAGTGAATGATGGCTAAATTCACTTTAACATGTTCAGGAGTGCAATCAATGGAAAAGTATAATTCACATTGGTATATCCATTG CTTTATATTCTCACCATTGAATCTAGGAAAATCAATACGAGCTAACCTAGTGCCACATGCATACGCAGCTGAATTGTGAAATGCATCTCCTGAATTCGAA CCTCTGAACCTAGGAGATTTTTCCAGGGAAGCTCTTCCCCTCGACGAACTGTCATGATCATCTCTACTCTTCTTGAGTAGCTCATCCATGGTGCCTTTCA AGGAATCAGCAAGAGTTTTCTGCATCGCTCCAGCGATTTCCACCAAACGAGTTTCAATGCGTTCCACCATGCGAGATTCCAAGCGTTCCTCAGCCTCACG CAACAGAGATTGGGATCGTGTAGAATCAGCCATAATTGAATCCTCCCAGGCAAAAAGAAAGCTCTAGATACCAATTGTTATGAGAATTCTAGGGATTCTA TGGAGAATTCGAAGAATTGAAGAAGAAAATGCAGGAATTTCAATGAATGAATTGAAATTCGAGATGTGTATTGATGGAGAAGAGAAGATTACAAGAGAAT TCTGAGTAAAATGATTGATTGAACAATTCAAAGCAACTAACTAACTATTTATACTAAAAATAGAAATGGCGGGAAAAACAGTTAGACTTTGAATTGGAAA GTTTCTAAAAAAGGCAAATTACAAATTCTGCCTTAACAGATAGCCTTGTTAGATAAGTAGCCAACCTTTTTTCACGTAATTGTGTCAAGCTTGTTACATA TTGTTTCGATTTTGGACCATGAAGTTAGTTTGGTATTGGTAGATAGATAGCCGATTGTTATTCCGGAGGGTTGACGTGTCAGAATCGGTAGAATAGGTCA TGAATTTGTTTGTGTTTGGGAGATTTTATGAATAGAGTAAATAGAACAAGGTATGGAATTAGCATTTGCTTAAGAGAATAGATCATAACATCATTTTTTG TTTTTGTGTTGAACACTACTTTCATGTGTTGTGTAATTTGTTTATTTGTTGTTATTTTGTTAAACTTGTGTGATTATTAAAGGGAGGAGTTTAGGAAGCA GTTCAACAAAGAAAATCCTGACAACAAAGCTGTGTCCGCCGTTGGCAAGGCTGCTGGAGCAAAATGGAAGACCATGTCCGAAGCTGATAAAGCACCTTAT GTGGCGAAGGCAGAGAAACGGAAGGTGGAGTATGAGAAGAGCATGAGAGCCTATAACAAAAAACAGGCTGAAGGTCCTGCTGCAGCGGATGAAGAAGAAT CTGAGAAATCAATTTCAGAGGTGCATGATGAGGATGACGGAGATGATGATGGAAGTGACGAGGTTTGCTTCAGTATTTTGTCTGTCCTGTTAGTTTTGTC CTTTAACGTTTTGCATCTGATTTATTCATTGAATTCTTGTGTGCAGGATGACGATGACGACGACGATGATGATGAGTAGTGGCTGGACTAAGAATAACAT TTATTTAGGA BLAST |
| Tissue | pods |
| Gene name | LI_gene_180492; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_516056
| Blastp | Transposon Ty3-G Gag-Pol polyprotein from Saccharomyces with 35.07% of identity |
|---|---|
| Blastx | Transposon Ty3-G Gag-Pol polyprotein from Saccharomyces with 35.07% of identity |
| Eggnog | - |
| Kegg | Link to kegg annotations (YGR109W-B) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_014490494.1) |
| Pfam | Retrotransposon gag protein (PF03732.16) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |