Id Trinity | TRINITY_DN50855_c1_g2_i5 |
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Name Transcript | Ll_transcript_516064 |
Sequence | CTTCAGTGCTGCTATATACCAATATATCATCAAAAAAGACCAATAAGAATTTCCTCAAAAACTCCTTAAACACATGGTTCATGAGGCTCTGAAATGTGGC AGGTGCATTTGTGAGGCCAAAGGGCATGACCACATATTCATAATGGCCACCATGGGTTTTAAAGGCAGTCTTGTGTATATCTTTGGAATCCATTTTCACT TGATGATAACCAGACCTAAGATCTATCTTGGAAAAGATAGTAGATCCATTCAGCTCATCCATGAGATCCTCCACCAAAGGGATAGGGAACCTATCCTTCA CAGTCCCCTTATTAAGCTCCCTATAATCAACACAAAGTCTCCAAGACCCATCCTTCTTTCCTACCAACACCACAGGGCTTGCATAGGGACTATTACTGTT CTGCACAAAGCCAGAATCAATCAAGTCCTGAACCAACTTGTCAATTATGGTTTTCTGATTGCCAGCATACCTGTAGGGTCTTTTATTCACTGGATTAGTA CCCTGCAGCAAGGGAATTTGGTGATCAAAGCCTGCTCTGGTAGGAGGTAATTGTTTAGGTTCCTCAAAAACATCCCTAAACTCTACCAATAAGGCTGCAA TGGTAGATGGCATTACTACAGGATCAGCATGAGTAGTAAGAGTCTGCAACAAACAGCCCTCAGCCTCCCCTACCTGAATCATGGATAAATGAACACCATT TTGCAAGGTCTTATCCACATGTTTAGCCTTCACCCCCTTGATACCAACCTGATTGGATCCTCTTAACACATGTCTTCTGCCTTGGACTTTAAACTCCATT CTCAATTGGTTAAAATTCCAAGTGATGTCCCCCAATGTAATCAGCCACTCAATTCCTAAGACCATGTCACAGCATCCCAATGGAATAAGCATCATATCAG TCTGGAATTCATGATTCTGCAGTGTCCAATGGAAATTCTTAACTATGGAAGAAATTTCCAACTTATTGCCATCAGCAACTGTCACCATGATTGTGTTCAA AGAATCCACTTTGCAGCCCAACCTCTTAGCCATATGGACATCCAGAAAGTTGTGTGTGCTACCACTATCAATCAAAATGTGCAGAGGTTTCTTCTTATAA CTCCCTGTCACCCTCATAGTTCTGAAACTAGCAACACCAGTCAAAGCATTCACAGAAATCTGAGGTTCACTGATTTCAGTGCTATGGTGATCTTCCTCAT CCAGCCCTTCAACTTCATTATCATCCAATTCTACAAAATGCAGTTGAACTTTCTTGTGTGTGAGACTATGCTCAGGGCTATAAGGTTCATCACAGAAGTA GCAAAGGCCTTTACTTCTTCTCTCAGTGATGAAAGCAGGGGACAGAGTCCTCATAGGCCTAGGTTTTGGTTTCACAGAATCCACCACATTGCTCTCCACT GACATAGATCTGTTAGTGCTAGCTGACCTGGCTGGTAACCCAGGTTTACTAAGTTTGTTGTGCAAAACAGAAGGTAAACCTTGAGTATTAGCAGACTCAT ACAATTGTGCCAAGGTGAATGCCTTCATCACATTTGAAGGTTGAAACATCCTCACTAACATGTGAATGTCATGCTTCAAACCACCAAGGAAACAGCTCAA GGTATGCTCAGGAGAGAGATCCAAACGAGTAATGATGGCATCAAACTCAGCATAATAATCACTGACTGACCCTTGCTGCCTCAATTTCATTAATTCCACC ATAGGATCTTCACAAACAGCACCAAATCGTTCAAGTAGTAAAGCCACATATTCTTCCCAACTCAAGCCTTGGAAATTCTTGAAGGATTTCAAACAGGCAT GATGCCATTGCAATGCCCTTCCTTCTAAGTGAATGATGGCTAAATTCACTTTAACATGTTCAGGAGTGCAATCAATGGAAAAGTATAATTCACATTGGTA TATCCATTGCTTTATATTCTCACCATTGAATCTAGGAAAATCAATACGAGCTAACCTAGTGCCACATGCATACGCAGCTGAATTGTGAAATGCATCTCCT GAATTCGAACCTCTGAACCTAGGAGATTTTTCCAGGGAAGCTCTTCCCCTCGACGAACTGTCATGATCATCTCTACTCTTCTTGAGTAGCTCATCCATGG TGCCTTTCAAGGAATCAGCAAGAGTTTTCTGCATCGCTCCAGCGATTTCCACCAAACGAGTTTCAATGCGTTCCACCATGCGAGATTCCAAGCGTTCCTC AGCCTCACGCAACAGAGATTGGGATCGTGTAGAATCAGCCATAATTGAATCCTCCCAGGCAAAAAGAAAGCTCTAGATACCAATTGTTATGAGAATTCTA GGGATTCTATGGAGAATTCGAAGAATTGAAGAAGAAAATGCAGGAATTTCAATGAATGAATTGAAATTCGAGATGTGTATTGATGGAGAAGAGAAGATTA CAAGAGAATTCTGAGTAAAATGATTGATTGAACAATTCAAAGCAACTAACTAACTATTTATACTAAAAATAGAAATGGCGGGAAAAACAGTTAGACTTTG AATTGGAAAGTTTCTAAAAAAGGCAAATTACAAATTCTGCCTTAACAGATAGCCTTGTTAGATAAGTAGCCAACCTTTTTTCACGTAATTGTGTCAAGCT TGTTACATATTGTTTCGATTTTGGACCATGAAGTTAGTTTGGTATTGGTAGATAGATAGCCGATTGTTATTCCGGAGGGTTGACGTGTCAGAATCGGTAG AATAGGTCATGAATTTGTTTGTGTTTGGGAGATTTTATGAATAGAGTAAATAGAACAAGGTATGGAATTAGCATTTGCTTAAGAGAATAGATCATAACAT CATTTTTTGTTTTTGTGTTGAACACTACTTTCATGTGTTGTGTAATTTGTTTATTTGTTGTTATTTTGTTAAACTTGTGTGATTATTAAAGGGAGGAGTT TAGGAAGCAGTTCAACAAAGAAAATCCTGACAACAAAGCTGTGTCCGCCGTTGGCAAGGCTGCTGGAGCAAAATGGAAGACCATGTCCGAAGCTGATAAA GCACCTTATGTGGCGAAGGCAGAGAAACGGAAGGTGGAGTATGAGAAGAGCATGAGAGCCTATAACAAAAAACAGGCTGAAGGTCCTGCTGCAGCGGATG AAGAAGAATCTGAGAAATCAATTTCAGAGGTGCATGATGAGGATGACGGAGATGATGATGGAAGTGACGAGGATGACGATGACGACGACGATGATGATGA GTAGTGGCTGGACTAAGAATAACATTTATTTAGGATTTTGTAATGATTTGATCATCCGATGTTGTGATGGTCTTGTCATTTTCTGATAAACATTTGCTGC TCCTAGAAAATACATTCCTGCTCCCTCAGTGAACTTGTTTTGAACTTCAGAAAGTGAATAGTAAGGGAGCTAACCTTTATTTGTACCATCATGTCTTTAG CTAAGGGGCGTTTATATCCTGTAGAGCTTTTATTTAGATTTAGTTCTTGATGAATTCCTGTTACTTCTGTATCAATATTATCAGCTTATCTTTCCTTGCC TGTTATTATGCAATGTATATATGTGATGGATGTTTCTTTTCTTTGCATAAGAAGTTCAACTCGC BLAST |
Tissue | pods |
Gene name | LI_gene_180492; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_516064
Blastp | Transposon Ty3-I Gag-Pol polyprotein from Saccharomyces with 43.94% of identity |
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Blastx | Transposon Ty3-I Gag-Pol polyprotein from Saccharomyces with 43.94% of identity |
Eggnog | - |
Kegg | Link to kegg annotations (YIL082W-A) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_014517438.1) |
Pfam | Retrotransposon gag protein (PF03732.16) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |