Ll_transcript_516485

• Id Trinity: TRINITY_DN50857_c0_g1_i10
• Name Transcript: Ll_transcript_516485
• Sequence: AAATTTATTATCAAGTACCAAAAACACACTCTCCTCCTTAAAATCACACACCCAAGAAACAATGGCGGTTCTGTCTTCATCCATTGAAGCACACACAGAA AAGGAGAGAAACAGTTAAAGCAACAAAACTAGTACAACGGCCACCGCCGCCGCCACCACTACTGGAACTGCCACCCATTTCCCATCACCATTTAATAACC AATCCCGAATCTGACCCAACCCTTTTACTTTTTCAACAATAAAAAATAAAAAATAAACTCTTTTTAGTCACACACTGTTTTTCTGTCCCCTACTTGGAAA AAGAACAAGTAAGCACGTTTCTTACACTGTTCGTTTTTTCCGTTACAACTTTTGCTTCAGTTTTCAGCTCTGGCTTGAGTTGTTCACTCTGATTGCTATG CCCATTTGCTCTTTATCCTTGTTTGCTTCGGTTCTGTCGTGAGATTCGTGTCTTTTCTCGGATTCCTTGCTCTTTTGCTAAGATCTGTTTGGTTTTGAAG ATTCTTCAGTTGTTTGGTTTCTGGGTAGTACTTGGTTTTTTATGTTGTTTCCAAATTTGGTAACTTTTTGCAGAATGAAGTGTTTTATTGAAGATTGCAA CTTGGGGTGGTTTTGGTTAAGGAGGGTTGGAAGGGAATGAAGGGTGAAGTCAAAAAACTTGTCTTTTGTAGTGAAACTGGTTTTGGTTGAGGATTGAAAA GGGTGTGGAATATTCTGAGCTTCTTAGCGTTTTATCTTTGATGGGTCAGAAAATTCTGTAACTGGGTGTTTGAGTTTTGTTGAGGTTTAAATGGGTTTTT GGTAGTAAAGATATGAAGAATGATATTATGTAGTGAGAAGAAAGATATGAAGAATTGATCCACTTAAGATTTAAGAGTGTGTGTTTGAAACTTTGAATCA TTGACTGTGATCTCAATTCCAAGGTTTGAAATTTCTGAAATGAAGCTCTCTTCAGCTGGTTTTAGTCCTCCACCTGAGGAAGGAGAAAAGCGAGTTTTGG ATTCAGAACTTTGGCATGCATGTGCTGGTCCCCTTGTTTCTTTACCAGCTGTTGGAAGCCGTGTGGTATACTTTCCACAAGGTCACAGTGAACATGTTGC TGCATCAACCAACAGGGAAGTGGATGGCCATATGCCTAATTATCCAAGCTTACCTCCCCAACTTATGTGTCAACTTCATAATTTGACTATGCATGCAGAT CCTGAGACTGACGAAGTATATGCACAGATGACCTTGCAACCTCTGAGTCCTGAAGAACAAAAGGAGGCATACTTTCCAGCAGATTTGGGCACTCCGAATA ATCAGCCAACAAACTACTTTTGCAAAACTTTGACTGCCAGTGACACAAGCACTCATGGGGGGTTTTCAGTTCCTCGTCGGGCAGCTGAGAAAGTGTTTCC TCCATTGGACTTCTCCCAACAGCCTCCTTGTCAAGAGTTGATTGCAAGGGATTTGCATGGTCATGAATGGAAATTCCGACATATCTTCCGGGGTGATATA TAAAGCAGAGATTGTTTACTTCTATTTAATTGCTACTGTAGTATTTATGTTCTTTTTTCCTTCCTGTTAGAAGTCCTTATTTTTATCAATGGGTGCCAAA AACAAGTGTACTTTCCTTTTACGATGCTTGAACTTGGTGTCTTTTTATGCAGGCCAGCCCAAAAGGCATCTACTTACAACGGGGTGGAGTGTCTTTGTGA GTGCTAAAAGACTTGTTGCTGGTGATTCAGTGCTGTTTATCTGGAATGAAAAGGGTCAATTGCTTCTTGGCATTCGGCATGCTAATCGGTCACAACCTGT GATGCCTTCGTCGGTGTTGTCAAGTGATAGTATGCACTTGGGCCTTCTTGCTGCTGCAGCTCATGCAGCTGCAACAAATAGTCGTTTTACCATTTTCTAC AACCCACGTGCTAGCCAATCAGAATTCGTCACACCTTTAGCAAAGTATGTTAAAGCTGTCTATCATACTCGAGTTTCAGTAGGCATGCGCTTCAGGATGT TGTTTGAGACAGAAGAATCTAGTGTGCGGCGATACATGGGCACAATAACAGGCATTAGTGACTTGGATCCTGCTCGGTGGCCAAATTCACATTGGCGCTC AGTCAAGGTTGGCTGGGATGAATCCATAGCCGGTGAGAGGCAACCTCGAGTGTCTCTATGGGAAATTGAGCCGTTAACAACGTTTCCAATGTACCCATCT CCTTTCCCCCTCAGGCTTAAAAGACCGTGGCCTCTAGGACTGCCTTCATACCATGGCATGAGGGATAATGATTTTGGCATGAATTCTTCACTATTGGGGT TTCAGTCTCTCGATTTTCAGGGAATTGGTATTAATCCTTGGATGCAACCAAGGCTTGATCCGTCCATGGTGAATTTTCAAAATGATATGTACCAATCCAT GGCTGCTGCTGCACTTCAGGATATGAGGACTTCAGATCCTTCCAAACAGCATCCTGCTTCTTCACTTCAATTTCAGCAACCACAGAACTTCCCCAACACG ACTCCCATTTTAATGCAGACACAGATGTTGCAGCAGTCTCAACCTCAGCAGGTTTTTCCGAATAATCAAGAAAATCAGCATTCATCTCCATCTCAATTTC AAAACCAAGCGCATCTTCAGCAGCATCTGCAGCATCAGCACTCATTTAATAATCATAATCATCATCAGCAACAACGACAACAACAGCAGCAACAACAGCA AATGGTAGATCATCAGCAGACTTCAAGTTCTGTCTCTCAGTTTGTTTCGATACCTCAATCTCAATCATCGCGCATGCAAGCTATCTCTTCGCTGTGCCAA CAGCGAAGTTTTTCTGATTCAAGTGGGAACCCTGCGGCTACTGCTACTGCTTCTCGCCTGCACAATATGATGGGTTCATTTCCCCAGGTTGAAACATCCC ACCTTGTCAACCTTCCGAGAACAAGTTTTTGGATGCCTGTTCAACACTCAACTGCATGGCCTCCTTCCAAGCGTGTTGCCGTGGACCCACTCCTTTCATA TGGAGGATCTCTATGTCAAGTGGAGCAGATAGGGCAGCCACAAATAACCATGTCTGAAAATGCTGTTACGTTGCCACCCTTTCCTGGTAGGGAATGCGCC GTAGAAGGGAGCACTGATCCACAAAACAATATTTTGTTTGGTGTTAATATAGATCCCTCTTCACTTCTAGTCAATAATGGGATGTCAAGTCTTAAAGGGG TCAGCGTCAATCGTCACTCATCATCCATGCCTTTTCAACATTCTAGTTACCTGAATGCCACAGGCACTGATACTTCACTAAATCCCGGAATGACACACAG CATTGATGAATCGGACTTCCTACATACTCCAGAAAATGGGGGCCGAGGAAACTCGCCAATCAAAACCTTTGTGAAGGTTTACAAATCAGGGACCTTTGGG AGATCATTGGATATCTCAAAATTCACTAACTACCATGAGCTGCGCAGTGAGCTTGCTCGCATGTTTGGCCTTGGAAGTGAGTTGGAGGATCCTGTAAGAT CAGGCTGGCAGCTTGTATTCGTTGACCGAGAGAATGATGTTCTGCTCCTCGGTGATGGTCCTTGGCCGGACTTTGTAAATAGCGTATGGTGCATCAAGAT ACTTTCCCCGCATGAAGTGCAACAAATGGGCAACAATAGCCTGGAGCTTCTGAACTCAGTTCCAATTCAGAGGCTCTCCAATGGCATCTGCGATGACTAC ACCGGCCGAGACGACCAAAGAAACTTAAGCAATGGAATAACCACTTTAGAGTACTGAATGATGTTTACACTCAATACTTTAAAGTCCTTCTCCTTGTATT ATTACCCTTGCTTCTCAACATTAGGGTTGGGAAGTGCTACTTAAATGTAGTTTGTAGACTACTATATAGCCTTTTATTTTCATGTTTTCACTACTTAGGA CCTTTTTATAAACTAAAACAATGTAACTATATGGCATCTTGTCACTGTACTTATCTATATACAATATATTGTTTACTAAATCTATTAGGAAGTCAATGTG TAAAGATGGTTCCTTCTATCTCTTGATATATTGATGATTTTTCTTCTTA
• Tissue: pods
• Gene name: LI_gene_180513;
• Additional information: details;

Expression of Ll_transcript_516485

FPKM

• PAB: 20.4
• PNAB: 24.7
• PS1: 8.4
• PS2: 7.3
• PS3: 11.3
• PW1: 23.6
• PW2: 16.4
• PW3: 16.3

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_516485

• Blastp: Auxin response factor 6 from Oryza sativa with 56.89% of identity
• Blastx: Auxin response factor 6 from Arabidopsis with 80.95% of identity
• Eggnog: auxin response factor(ENOG410YA3R)
• Kegg: Link to kegg annotations (4328406)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_003546066.1)
• Pfam: B3 DNA binding domain (PF02362.20)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;