| Id Trinity | TRINITY_DN50857_c0_g1_i11 |
|---|---|
| Name Transcript | Ll_transcript_516492 |
| Sequence | AAATTTATTATCAAGTACCAAAAACACACTCTCCTCCTTAAAATCACACACCCAAGAAACAATGGCGGTTCTGTCTTCATCCATTGAAGCACACACAGAA AAGGAGAGAAACAGTTAAAGCAACAAAACTAGTACAACGGCCACCGCCGCCGCCACCACTACTGGAACTGCCACCCATTTCCCATCACCATTTAATAACC AATCCCGAATCTGACCCAACCCTTTTACTTTTTCAACAATAAAAAATAAAAAATAAACTCTTTTTAGTCACACACTGTTTTTCTGTCCCCTACTTGGAAA AAGAACAAGTAAGCACGTTTCTTACACTGTTCGTTTTTTCCGTTACAACTTTTGCTTCAGTTTTCAGCTCTGGCTTGAGTTGTTCACTCTGATTGCTATG CCCATTTGCTCTTTATCCTTGTTTGCTTCGGTTCTGTCGTGAGATTCGTGTCTTTTCTCGGATTCCTTGCTCTTTTGCTAAGATCTGTTTGGTTTTGAAG ATTCTTCAGTTGTTTGGTTTCTGGGTAGTACTTGGTTTTTTATGTTGTTTCCAAATTTGGTAACTTTTTGCAGAATGAAGTGTTTTATTGAAGATTGCAA CTTGGGGTGGTTTTGGTTAAGGAGGGTTGGAAGGGAATGAAGGGTGAAGTCAAAAAACTTGTCTTTTGTAGTGAAACTGGTTTTGGTTGAGGATTGAAAA GGGTGTGGAATATTCTGAGCTTCTTAGCGTTTTATCTTTGATGGGTCAGAAAATTCTGTAACTGGGTGTTTGAGTTTTGTTGAGGTTTAAATGGGTTTTT GGTAGTAAAGATATGAAGAATGATATTATGTAGTGAGAAGAAAGATATGAAGAATTGATCCACTTAAGATTTAAGAGTGTGTGTTTGAAACTTTGAATCA TTGACTGTGATCTCAATTCCAAGGTTTGAAATTTCTGAAATGAAGCTCTCTTCAGCTGGTTTTAGTCCTCCACCTGAGGAAGGAGAAAAGCGAGTTTTGG ATTCAGAACTTTGGCATGCATGTGCTGGTCCCCTTGTTTCTTTACCAGCTGTTGGAAGCCGTGTGGTATACTTTCCACAAGGTCACAGTGAACATGTTGC TGCATCAACCAACAGGGAAGTGGATGGCCATATGCCTAATTATCCAAGCTTACCTCCCCAACTTATGTGTCAACTTCATAATTTGACTATGCATGCAGAT CCTGAGACTGACGAAGTATATGCACAGATGACCTTGCAACCTCTGAGTCCTGAAGAACAAAAGGAGGCATACTTTCCAGCAGATTTGGGCACTCCGAATA ATCAGCCAACAAACTACTTTTGCAAAACTTTGACTGCCAGTGACACAAGCACTCATGGGGGGTTTTCAGTTCCTCGTCGGGCAGCTGAGAAAGTGTTTCC TCCATTGGACTTCTCCCAACAGCCTCCTTGTCAAGAGTTGATTGCAAGGGATTTGCATGGTCATGAATGGAAATTCCGACATATCTTCCGGGGTGATATA TAAAGCAGAGATTGTTTACTTCTATTTAATTGCTACTGTAGTATTTATGTTCTTTTTTCCTTCCTGTTAGAAGTCCTTATTTTTATCAATGGGTGCCAAA AACAAGTGTACTTTCCTTTTACGATGCTTGAACTTGGTGTCTTTTTATGCAGGCCAGCCCAAAAGGCATCTACTTACAACGGGGTGGAGTGTCTTTGTGA GTGCTAAAAGACTTGTTGCTGGTGATTCAGTGCTGTTTATCTGGAATGAAAAGGGTCAATTGCTTCTTGGCATTCGGCATGCTAATCGGTCACAACCTGT GATGCCTTCGTCGGTGTTGTCAAGTGATAGTATGCACTTGGGCCTTCTTGCTGCTGCAGCTCATGCAGCTGCAACAAATAGTCGTTTTACCATTTTCTAC AACCCACGTGCTAGCCAATCAGAATTCGTCACACCTTTAGCAAAGTATGTTAAAGCTGTCTATCATACTCGAGTTTCAGTAGGCATGCGCTTCAGGATGT TGTTTGAGACAGAAGAATCTAGTGTGCGGCGATACATGGGCACAATAACAGGCATTAGTGACTTGGATCCTGCTCGGTGGCCAAATTCACATTGGCGCTC AGTCAAGGTTGGCTGGGATGAATCCATAGCCGGTGAGAGGCAACCTCGAGTGTCTCTATGGGAAATTGAGCCGTTAACAACGTTTCCAATGTACCCATCT CCTTTCCCCCTCAGGCTTAAAAGACCGTGGCCTCTAGGACTGCCTTCATACCATGGCATGAGGGATAATGATTTTGGCATGAATTCTTCACTATTGGGGT TTCAGTCTCTCGATTTTCAGGGAATTGGTATTAATCCTTGGATGCAACCAAGGCTTGATCCGTCCATGGTGAATTTTCAAAATGATATGTACCAATCCAT GGCTGCTGCTGCACTTCAGGATATGAGGACTTCAGATCCTTCCAAACAGCATCCTGCTTCTTCACTTCAATTTCAGCAACCACAGAACTTCCCCAACACG ACTCCCATTTTAATGCAGACACAGATGTTGCAGCAGTCTCAACCTCAGCAGGTTTTTCCGAATAATCAAGAAAATCAGCATTCATCTCCATCTCAATTTC AAAACCAAGCGCATCTTCAGCAGCATCTGCAGCATCAGCACTCATTTAATAATCATAATCATCATCAGCAACAACGACAACAACAGCAGCAACAACAGCA AATGGTAGATCATCAGCAGACTTCAAGTTCTGTCTCTCAGTTTGTTTCGATACCTCAATCTCAATCATCGCGCATGCAAGCTATCTCTTCGCTGTGCCAA CAGCGAAGTTTTTCTGATTCAAGTGGGAACCCTGCGGCTACTGCTACTGCTTCTCGCCTGCACAATATGATGGGTTCATTTCCCCAGGTTGAAACATCCC ACCTTGTCAACCTTCCGAGAACAAGTTTTTGGATGCCTGTTCAACACTCAACTGCATGGCCTCCTTCCAAGCGTGTTGCCGTGGACCCACTCCTTTCATA TGGAGGATCTCTATGTCAAGTGGAGCAGATAGGGCAGCCACAAATAACCATGTCTGAAAATGCTGTTACGTTGCCACCCTTTCCTGGTAGGGAATGCGCC GTAGAAGGGAGCACTGATCCACAAAACAATATTTTGTTTGGTGTTAATATAGATCCCTCTTCACTTCTAGTCAATAATGGGATGTCAAGTCTTAAAGGGG TCAGCGTCAATCGTCACTCATCATCCATGCCTTTTCAACATTCTAGTTACCTGAATGCCACAGGCACTGATACTTCACTAAATCCCGGAATGACACACAG CATTGATGAATCGGACTTCCTACATACTCCAGAAAATGGGGGCCGAGGAAACTCGCCAATCAAAACCTTTGTGAAGGTTTACAAATCAGGGACCTTTGGG AGATCATTGGATATCTCAAAATTCACTAACTACCATGAGCTGCGCAGTGAGCTTGCTCGCATGTTTGGCCTTGGAAGTGAGTTGGAGGATCCTGTAAGAT CAGGCTGGCAGCTTGTATTCGTTGACCGAGAGAATGATGTTCTGCTCCTCGGTGATGGTCCTTGGCCGTAAGTATTTTCCACACTCTGTTGCCTTGTTCT CTGTTCCTTTTTTAAATTACAATATACATGAATTGCAGCCTCTTCTTTCAGTCATATGGTAGTTTTATAAAAACTAAAACCGCAGCCACTTCAGAAATAA TTGAGTTACATAATCTTCCTCGTTTACGGGCTGTCCTTATGGAGAAGATGATATAAATAGGATAATGCTACTCATAGAAGCACGAACACTTCATATTAGC GACACTCTTAATCATATTCTTTAACGTTTTATATTCTTCACCATATCCCATTTCCGTTGTATCCGTGTCCCATGTTGTGTTTGTGCTTCCTTGATACTAC TCAATCACATTTTATATTTTTCACCGTATCCCATTTCCATTCATGTGTTCTGGATTCCAGTACCTATAATTTATTCTGTTTATGAAAGCAAATCACTACG CCTTCTGTCCTTACGCGATCCTTTTTATTACAGGGACTTTGTAAATAGCGTATGGTGCATCAAGATACTTTCCCCGCATGAAGTGCAACAAATGGGCAAC AATAGCCTGGAGCTTCTGAACTCAGTTCCAATTCAGAGGCTCTCCAATGGCATCTGCGATGACTACACCGGCCGAGACGACCAAAGAAACTTAAGCAATG GAATAACCACTTTAGAGTACTGAATGATGTTTACACTCAATACTTTAAAGTCCTTCTCCTTGTATTATTACCCTTGCTTCTCAACATTAGGGTTGGGAAG TGCTACTTAAATGTAGTTTGTAGACTACTATATAGCCTTTTATTTTCATGTTTTCACTACTTAGGACCTTTTTATAAACTAAAACAATGTAACTATATGG CATCTTGTCACTGTACTTATCTATATACAATATATTGTTTACTAAATCTATTAGGAAGTCAATGTGTAAAGATGGTTCCTTCTATCTCTTGATATATTGA TGATTTTTCTTCTTA BLAST |
| Tissue | pods |
| Gene name | LI_gene_180513; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_516492
| Blastp | Auxin response factor 6 from Oryza sativa with 57.14% of identity |
|---|---|
| Blastx | Auxin response factor 6 from Arabidopsis with 80.95% of identity |
| Eggnog | auxin response factor(ENOG410YA3R) |
| Kegg | Link to kegg annotations (4328406) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_003546066.1) |
| Pfam | B3 DNA binding domain (PF02362.20) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |