| Id Trinity | TRINITY_DN50857_c0_g1_i4 |
|---|---|
| Name Transcript | Ll_transcript_516470 |
| Sequence | CGGGCACAGTGACCCTGCTCATTTAAGGGTTGAGTTAGTTTTGTAATCATTTAGCAAAACCAATTTTATTCTTTCACTGTGGTGACTATTAGTGCTTAAC TCACTCCTAAGAACAATTCTTTAGTCTTGAAATGTTGCAGGTTAATGACTTAGCGCACACAAACGAAATTTCTCCACCTTTCTCCCTGAAATCAGCACAT GAAATTAACATTTGAATGTATCTCTCTCGTTTAGCCGCATATACTATATGTATGCGTTTCCTAAATCAGCATTCTTCTGCGTAGGTTGCTGCATCAACCA ACAGGGAAGTGGATGGCCATATGCCTAATTATCCAAGCTTACCTCCCCAACTTATGTGTCAACTTCATAATTTGACTATGCATGCAGATCCTGAGACTGA CGAAGTATATGCACAGATGACCTTGCAACCTCTGAGTCCTGAAGAACAAAAGGAGGCATACTTTCCAGCAGATTTGGGCACTCCGAATAATCAGCCAACA AACTACTTTTGCAAAACTTTGACTGCCAGTGACACAAGCACTCATGGGGGGTTTTCAGTTCCTCGTCGGGCAGCTGAGAAAGTGTTTCCTCCATTGGACT TCTCCCAACAGCCTCCTTGTCAAGAGTTGATTGCAAGGGATTTGCATGGTCATGAATGGAAATTCCGACATATCTTCCGGGGCCAGCCCAAAAGGCATCT ACTTACAACGGGGTGGAGTGTCTTTGTGAGTGCTAAAAGACTTGTTGCTGGTGATTCAGTGCTGTTTATCTGGAATGAAAAGGGTCAATTGCTTCTTGGC ATTCGGCATGCTAATCGGTCACAACCTGTGATGCCTTCGTCGGTGTTGTCAAGTGATAGTATGCACTTGGGCCTTCTTGCTGCTGCAGCTCATGCAGCTG CAACAAATAGTCGTTTTACCATTTTCTACAACCCACGTGCTAGCCAATCAGAATTCGTCACACCTTTAGCAAAGTATGTTAAAGCTGTCTATCATACTCG AGTTTCAGTAGGCATGCGCTTCAGGATGTTGTTTGAGACAGAAGAATCTAGTGTGCGGCGGTAGGTTCTTGAAATTTCTCTCGTTGAAAGTGATACCCTG TAATATCTATGTCCTGTAATATTTCATTTTGAATTTTAACATGGTTGCTGTTTCCAATTTGCCTTTAGTGTTGGCTTAATATTGTAGATTTTCTTCGCTT TTGTAGAGTGGTGCTATGATTTTCTCCAATTAAGTGCCTTAAATCTTTGATTCATGATAGGTGAAGACCCAAATATTCTAAGAGTTAGAAAAAAAAACTA ATCGGATCATCTTGCAGTTGAATCAGAAATATCAGATTAATGAGGTTCATTTTTTGCTTGGTGCCTTGTTCTGTGCTTCTTTTATTAAACAAATAGGAGG TTTTATTCTAAACCGTGCGCCAATGCCTCTAAGGTTTGATTGTAAAGTTAAGGTGATATTTGTATCATGTTTCTTATGGCTCTATCAAGTATAGGCACGT GCTACTGGAAAGTATTCCTGAAATTGAATTCAACATAAGATACACAATATGTTTTGCTTCATTTATCTTGACATGTCATTAATCAATTGCATGGGTAGTA GTTTTCCTTTCTTCTCTTTAAATTTTTTGAATGATGATCTATAACTTATGGCAGTGAGATGAAGTAGGGACATGGATTCGAATCTATCCTTCTTATTATG ATCTTGAATAATGGCCTAGTATAACAATGATGCTATCTATGAAGTTGATGTGATGAAATTTCTCACTGATAGGATAAATATAGTTAGCGACTTTGTAGAG TTGGTGACCCATGTCTATAATATACTAATATATGCTCATGCAGATACATGGGCACAATAACAGGCATTAGTGACTTGGATCCTGCTCGGTGGCCAAATTC ACATTGGCGCTCAGTCAAGGTTGGCTGGGATGAATCCATAGCCGGTGAGAGGCAACCTCGAGTGTCTCTATGGGAAATTGAGCCGTTAACAACGTTTCCA ATGTACCCATCTCCTTTCCCCCTCAGGCTTAAAAGACCGTGGCCTCTAGGACTGCCTTCATACCATGGCATGAGGGATAATGATTTTGGCATGAATTCTT CACTATTGGGGTTTCAGTCTCTCGATTTTCAGGGAATTGGTATTAATCCTTGGATGCAACCAAGGCTTGATCCGTCCATGGTGAATTTTCAAAATGATAT GTACCAATCCATGGCTGCTGCTGCACTTCAGGATATGAGGACTTCAGATCCTTCCAAACAGCATCCTGCTTCTTCACTTCAATTTCAGCAACCACAGAAC TTCCCCAACACGACTCCCATTTTAATGCAGACACAGATGTTGCAGCAGTCTCAACCTCAGCAGGTTTTTCCGAATAATCAAGAAAATCAGCATTCATCTC CATCTCAATTTCAAAACCAAGCGCATCTTCAGCAGCATCTGCAGCATCAGCACTCATTTAATAATCATAATCATCATCAGCAACAACGACAACAACAGCA GCAACAACAGCAAATGGTAGATCATCAGCAGACTTCAAGTTCTGTCTCTCAGTTTGTTTCGATACCTCAATCTCAATCATCGCGCATGCAAGCTATCTCT TCGCTGTGCCAACAGCGAAGTTTTTCTGATTCAAGTGGGAACCCTGCGGCTACTGCTACTGCTTCTCGCCTGCACAATATGATGGGTTCATTTCCCCAGG TTGAAACATCCCACCTTGTCAACCTTCCGAGAACAAGTTTTTGGATGCCTGTTCAACACTCAACTGCATGGCCTCCTTCCAAGCGTGTTGCCGTGGACCC ACTCCTTTCATATGGAGGATCTCTATGTCAAGTGGAGCAGATAGGGCAGCCACAAATAACCATGTCTGAAAATGCTGTTACGTTGCCACCCTTTCCTGGT AGGGAATGCGCCGTAGAAGGGAGCACTGATCCACAAAACAATATTTTGTTTGGTGTTAATATAGATCCCTCTTCACTTCTAGTCAATAATGGGATGTCAA GTCTTAAAGGGGTCAGCGTCAATCGTCACTCATCATCCATGCCTTTTCAACATTCTAGTTACCTGAATGCCACAGGCACTGATACTTCACTAAATCCCGG AATGACACACAGCATTGATGAATCGGACTTCCTACATACTCCAGAAAATGGGGGCCGAGGAAACTCGCCAATCAAAACCTTTGTGAAGGTTTACAAATCA GGGACCTTTGGGAGATCATTGGATATCTCAAAATTCACTAACTACCATGAGCTGCGCAGTGAGCTTGCTCGCATGTTTGGCCTTGGAAGTGAGTTGGAGG ATCCTGTAAGATCAGGCTGGCAGCTTGTATTCGTTGACCGAGAGAATGATGTTCTGCTCCTCGGTGATGGTCCTTGGCCGTAAGTATTTTCCACACTCTG TTGCCTTGTTCTCTGTTCCTTTTTTAAATTACAATATACATGAATTGCAGCCTCTTCTTTCAGTCATATGGTAGTTTTATAAAAACTAAAACCGCAGCCA CTTCAGAAATAATTGAGTTACATAATCTTCCTCGTTTACGGGCTGTCCTTATGGAGAAGATGATATAAATAGGATAATGCTACTCATAGAAGCACGAACA CTTCATATTAGCGACACTCTTAATCATATTCTTTAACGTTTTATATTCTTCACCATATCCCATTTCCGTTGTATCCGTGTCCCATGTTGTGTTTGTGCTT CCTTGATACTACTCAATCACATTTTATATTTTTCACCGTATCCCATTTCCATTCATGTGTTCTGGATTCCAGTACCTATAATTTATTCTGTTTATGAAAG CAAATCACTACGCCTTCTGTCCTTACGCGATCCTTTTTATTACAGGGACTTTGTAAATAGCGTATGGT BLAST |
| Tissue | pods |
| Gene name | LI_gene_180513; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_516470
| Blastp | Auxin response factor 6 from Oryza sativa with 49.35% of identity |
|---|---|
| Blastx | Auxin response factor 25 from Oryza sativa with 86.19% of identity |
| Eggnog | auxin response factor(ENOG410YA3R) |
| Kegg | Link to kegg annotations (4328406) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_003546066.1) |
| Pfam | Auxin response factor (PF06507.12) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |