Ll_transcript_516484

• Id Trinity: TRINITY_DN50857_c0_g1_i9
• Name Transcript: Ll_transcript_516484
• Sequence: AAATTTATTATCAAGTACCAAAAACACACTCTCCTCCTTAAAATCACACACCCAAGAAACAATGGCGGTTCTGTCTTCATCCATTGAAGCACACACAGAA AAGGAGAGAAACAGTTAAAGCAACAAAACTAGTACAACGGCCACCGCCGCCGCCACCACTACTGGAACTGCCACCCATTTCCCATCACCATTTAATAACC AATCCCGAATCTGACCCAACCCTTTTACTTTTTCAACAATAAAAAATAAAAAATAAACTCTTTTTAGTCACACACTGTTTTTCTGTCCCCTACTTGGAAA AAGAACAAAATGAAGTGTTTTATTGAAGATTGCAACTTGGGGTGGTTTTGGTTAAGGAGGGTTGGAAGGGAATGAAGGGTGAAGTCAAAAAACTTGTCTT TTGTAGTGAAACTGGTTTTGGTTGAGGATTGAAAAGGGTGTGGAATATTCTGAGCTTCTTAGCGTTTTATCTTTGATGGGTCAGAAAATTCTGTAACTGG GTGTTTGAGTTTTGTTGAGGTTTAAATGGGTTTTTGGTAGTAAAGATATGAAGAATGATATTATGTAGTGAGAAGAAAGATATGAAGAATTGATCCACTT AAGATTTAAGAGTGTGTGTTTGAAACTTTGAATCATTGACTGTGATCTCAATTCCAAGGTTTGAAATTTCTGAAATGAAGCTCTCTTCAGCTGGTTTTAG TCCTCCACCTGAGGAAGGAGAAAAGCGAGTTTTGGATTCAGAACTTTGGCATGCATGTGCTGGTCCCCTTGTTTCTTTACCAGCTGTTGGAAGCCGTGTG GTATACTTTCCACAAGGTCACAGTGAACATGTTGCTGCATCAACCAACAGGGAAGTGGATGGCCATATGCCTAATTATCCAAGCTTACCTCCCCAACTTA TGTGTCAACTTCATAATTTGACTATGCATGCAGATCCTGAGACTGACGAAGTATATGCACAGATGACCTTGCAACCTCTGAGTCCTGAAGAACAAAAGGA GGCATACTTTCCAGCAGATTTGGGCACTCCGAATAATCAGCCAACAAACTACTTTTGCAAAACTTTGACTGCCAGTGACACAAGCACTCATGGGGGGTTT TCAGTTCCTCGTCGGGCAGCTGAGAAAGTGTTTCCTCCATTGGACTTCTCCCAACAGCCTCCTTGTCAAGAGTTGATTGCAAGGGATTTGCATGGTCATG AATGGAAATTCCGACATATCTTCCGGGGCCAGCCCAAAAGGCATCTACTTACAACGGGGTGGAGTGTCTTTGTGAGTGCTAAAAGACTTGTTGCTGGTGA TTCAGTGCTGTTTATCTGGAATGAAAAGGGTCAATTGCTTCTTGGCATTCGGCATGCTAATCGGTCACAACCTGTGATGCCTTCGTCGGTGTTGTCAAGT GATAGTATGCACTTGGGCCTTCTTGCTGCTGCAGCTCATGCAGCTGCAACAAATAGTCGTTTTACCATTTTCTACAACCCACGTGCTAGCCAATCAGAAT TCGTCACACCTTTAGCAAAGTATGTTAAAGCTGTCTATCATACTCGAGTTTCAGTAGGCATGCGCTTCAGGATGTTGTTTGAGACAGAAGAATCTAGTGT GCGGCGATACATGGGCACAATAACAGGCATTAGTGACTTGGATCCTGCTCGGTGGCCAAATTCACATTGGCGCTCAGTCAAGGTTGGCTGGGATGAATCC ATAGCCGGTGAGAGGCAACCTCGAGTGTCTCTATGGGAAATTGAGCCGTTAACAACGTTTCCAATGTACCCATCTCCTTTCCCCCTCAGGCTTAAAAGAC CGTGGCCTCTAGGACTGCCTTCATACCATGGCATGAGGGATAATGATTTTGGCATGAATTCTTCACTATTGGGGTTTCAGTCTCTCGATTTTCAGGGAAT TGGTATTAATCCTTGGATGCAACCAAGGCTTGATCCGTCCATGGTGAATTTTCAAAATGATATGTACCAATCCATGGCTGCTGCTGCACTTCAGGATATG AGGACTTCAGATCCTTCCAAACAGCATCCTGCTTCTTCACTTCAATTTCAGCAACCACAGAACTTCCCCAACACGACTCCCATTTTAATGCAGACACAGA TGTTGCAGCAGTCTCAACCTCAGCAGGTTTTTCCGAATAATCAAGAAAATCAGCATTCATCTCCATCTCAATTTCAAAACCAAGCGCATCTTCAGCAGCA TCTGCAGCATCAGCACTCATTTAATAATCATAATCATCATCAGCAACAACGACAACAACAGCAGCAACAACAGCAAATGGTAGATCATCAGCAGACTTCA AGTTCTGTCTCTCAGTTTGTTTCGATACCTCAATCTCAATCATCGCGCATGCAAGCTATCTCTTCGCTGTGCCAACAGCGAAGTTTTTCTGATTCAAGTG GGAACCCTGCGGCTACTGCTACTGCTTCTCGCCTGCACAATATGATGGGTTCATTTCCCCAGGTTGAAACATCCCACCTTGTCAACCTTCCGAGAACAAG TTTTTGGATGCCTGTTCAACACTCAACTGCATGGCCTCCTTCCAAGCGTGTTGCCGTGGACCCACTCCTTTCATATGGAGGATCTCTATGTCAAGTGGAG CAGATAGGGCAGCCACAAATAACCATGTCTGAAAATGCTGTTACGTTGCCACCCTTTCCTGGTAGGGAATGCGCCGTAGAAGGGAGCACTGATCCACAAA ACAATATTTTGTTTGGTGTTAATATAGATCCCTCTTCACTTCTAGTCAATAATGGGATGTCAAGTCTTAAAGGGGTCAGCGTCAATCGTCACTCATCATC CATGCCTTTTCAACATTCTAGTTACCTGAATGCCACAGGCACTGATACTTCACTAAATCCCGGAATGACACACAGCATTGATGAATCGGACTTCCTACAT ACTCCAGAAAATGGGGGCCGAGGAAACTCGCCAATCAAAACCTTTGTGAAGGTTTACAAATCAGGGACCTTTGGGAGATCATTGGATATCTCAAAATTCA CTAACTACCATGAGCTGCGCAGTGAGCTTGCTCGCATGTTTGGCCTTGGAAGTGAGTTGGAGGATCCTGTAAGATCAGGCTGGCAGCTTGTATTCGTTGA CCGAGAGAATGATGTTCTGCTCCTCGGTGATGGTCCTTGGCCGTAAGTATTTTCCACACTCTGTTGCCTTGTTCTCTGTTCCTTTTTTAAATTACAATAT ACATGAATTGCAGCCTCTTCTTTCAGTCATATGGTAGTTTTATAAAAACTAAAACCGCAGCCACTTCAGAAATAATTGAGTTACATAATCTTCCTCGTTT ACGGGCTGTCCTTATGGAGAAGATGATATAAATAGGATAATGCTACTCATAGAAGCACGAACACTTCATATTAGCGACACTCTTAATCATATTCTTTAAC GTTTTATATTCTTCACCATATCCCATTTCCGTTGTATCCGTGTCCCATGTTGTGTTTGTGCTTCCTTGATACTACTCAATCACATTTTATATTTTTCACC GTATCCCATTTCCATTCATGTGTTCTGGATTCCAGTACCTATAATTTATTCTGTTTATGAAAGCAAATCACTACGCCTTCTGTCCTTACGCGATCCTTTT TATTACAGGGACTTTGTAAATAGCGTATGGT
• Tissue: pods
• Gene name: LI_gene_180513;
• Additional information: details;

Expression of Ll_transcript_516484

FPKM

• PAB: 4.7
• PNAB: 3.2
• PS1: 0.1
• PS2: 0.4
• PS3: 0.7
• PW1: 2.2
• PW2: 3.3
• PW3: 2.3

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_516484

• Blastp: Auxin response factor 6 from Oryza sativa with 61.98% of identity
• Blastx: Auxin response factor 6 from Arabidopsis with 82.39% of identity
• Eggnog: auxin response factor(ENOG410YA3R)
• Kegg: Link to kegg annotations (4328406)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_003542951.1)
• Pfam: B3 DNA binding domain (PF02362.20)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;