Ll_transcript_516494

• Id Trinity: TRINITY_DN50857_c0_g2_i20
• Name Transcript: Ll_transcript_516494
• Sequence: GAAAAGAAAAGTGAAACCTTTTCTCTCTCTCTTGAAAAATCTGACAGGATCGTACTCATACACACTCTTAAAATAATTGCAGTTTGTGTTCTCATTGATT GGAAGCTGTAAGAGAGAGAGAAAGAGAAAGGGGTAAAAGCAACAGTAGTAGTAGACTAGTAGAAGAAGAACATAGCATAGCGTGGCCACTAAGTAGTTAA GTATCAACCATAACACCATAAACTACAACAACAACTAGAACAAAGTACATACAATACCATAGCTACTGCAAAAATTTCATCTTTTTCCAACCCCATTTCT TATCTTTTCTGGGTTTTTCTGCATTCTTTGAGATCCCTTCTCTTCTGGCTGTTCATTCATTGCTCCTTCAGATCTGTTTGCTTTTCAAGTTTATTCCTTT ATTTAGCTTACTGAAAAGCAGAAGCTGCATATCTTTTGTTACTTGGTGTTGTTGGGTTCTGAAAGAATAGATATTGTAGCATGAAGTGTTCAGTTCAAAA TTGGAACTTGGGGTGTTGGGGGTTAAGTGGAGTAAAAGCTAATGAGGCATAAAGCTATTGTCTTATGTAGTGATACTGGTTTTGGTTGAGAATTGAAGGG TGGGTATTGTTTAGATTTGAAGGTTTTTTTTTGGTGAATGGGATTAGGGGACATATAACAAGGATTATATTCTTCTGTTGAAAAGGATCGTGGTTGTCAT TTTCCCAAAATTTTGTTGCTTACTTAGTCTACTGAAGAAGATTGCTTTGGAATCATTGATTGTGGTTTCAATTTTGAGACTTTTCTTTTTTTGTTCAAAT GAGACTTTCTTCAGCTGGTTTTAGTCCTCCACCCCTGGAAGGGGAAAAGAGATGTCTAGATTCAGAACTTTGGCATGCATGTGCTGGTCCTCTTGTTTCA TTGCCGGCAGTTGGAAGCCGTGTGTTTTACTTTCCACAAGGTCATAGTGAACAAGTGGCAGTGTCAACCAACAAGGAAGTGGATGCCCATATCCCCAACT ATCCAAGCTTACCACCTCAGCTTATTTGTCAGCTCCATAATCTGACTATGCATGCGGATGCTGAGACTGATGAAGTCTATGCACAGATGACCTTGCAACC TTTGAATCCTCAAGAGCAAAAGGAAGCGTACCTTCCAGCAGAGTTGGGCACTCAGAGTAAACAGCCAACAAACTACTTCTGCAAAACTTTGACGGCCAGT GACACAAGCACTCATGGAGGATTCTCTGTTCCTCGTCGGGCTGCTGAAAAAGTCTTTCCTCCATTGGACTTCTCTCAACAGCCTCCCTGCCAAGAGTTAA TTGCAAGGGATTTGCATGGTATTGAATGGAAATTCAGACATATCTTCCGGGGCCAGCCCAAAAGACATCTTCTTACAACTGGATGGAGTGTCTTTGTGAG TGCGAAAAGACTTGTTGCTGGTGATGCTGTGCTGTTTATCTGGAATGAGAAGAACCAATTGCTTCTTGGCATTCGGCGGGCAAATCGACCACAAACTGTG ATGCCTTCATCAGTTTTGTCAAGTGACAGCATGCACTTGGGGCTTCTTGCTGCAGCAGCTCATGCAGCTGCAACAAATAGTCGTTTCACCATCTTCTATA ACCCACGTGCTTGCCCATCAGAATTTGTCATACCCTTAGCAAAGTATGTTAAAGCTGTGTATCACACTCGAGTCTCTGTTGGTATGCGCTTCAGGATGCT ATTTGAAACAGAGGAGTCAAGTGTGAGGCGATACATGGGAACAATAACTGGCATTAGTGACATGGATCCTGTTCGGTGGCCGAATTCATATTGGCGCTCA GTGAAGGTTGGCTGGGATGAATCCACTGCAGGAGATAGGCAACCTAGAGTGTCTCTTTGGGAAATTGAGCCATTAACAACATTTCCCATGTATCCATCGC CATTCCCGCTTCGGCTTAAACGACCATGGCCTCCGGGGCTGCCTTCATTTCATGGCATGAAGGATGAAGATTTTGGAATGAATTCTCCGCTGCTGTGGCT TCGAGACCCTGATAGAGGGCTTCAGTCTATTAACTTTCAGGGGATGGGGGTTAATCCTTGGATGCAGCAAAGGTTTGATCCGTCCATGCTGAACATGCAA ACAGATATGTATCAAGCTGTGTCTGCCACTGCTCTTCCGGATATGAGGACTTTAGATCCTTCCAAACAGCATTCTTCTTCCTTAGTTCAATTTCAGCAAC CACAGAACTTCCCGAACAGGACTGCTGCTTTAATGCAGGCCCAGATGTTGCAGCAGTCACAGTCGCAGCAGGCTTTTCAGAATAATCAAGAGAATCAGCA GTCATCTCAATCTCAGGCACAAACTCAGATGCAGCAGCTGCAGCACCAACACTCATTCAATAGTCAGCATCAGCTTCATCACAACCAACAACCACAACAA ATGCAGCAGCAACAACAGCAGCAACCACAACAAATGGTAGATAATCAGCAGATTTCTAATGCAGTCTCTACAATGTCTCAGTTTATTTCGGCACCTCAAT CTCAATCACCACTGATGCAAGCTATCTCTTCACTGTCCCAACAACAAACGTTTTCTGATTCTAGTGCGAACCCTACCACTATTGTTTCTCCCCTGCACAA TATCTTGGGTTCGTTTGCCCTGGATGAAAATTCCCACCTTCTGAACCTTCCTAGAACAAGCTCTTGGATTCCGGTTCAGACTTCAACTGCATGGCCACCT GCCAAGCGTGTTGCAGTGGATTCTCTCCTTTCTTCCGGGGCATCTCAATGTGCTATGCTACAGGCAGATCAGTTAGGGCAGCCACAGAGTACCATGTCAA AAAATGCTATTACATTACCCCCTTTTCCTGGTAGAGAGTGCTCAATAGATCAAGAAGGGAACAATGATCCTCAAAATAATCTTTTATTTGGTGTTAATAT AGAGCCCTCATCACTTCTAGTTCAAAATGGGATGGCAGGCCTTAAGGGAGTCGTCGGCAACAGTGACTCCCCAGCCATGCCATTTCAGTCTTCTAATTTC ATGAATAACACAGACATTGACTCTTCATTGAATCATGGAATGACACGTAGCATTGGTGATTCAGGCTTCCTGCATACCCAAGAAAATGCAGGGCAAGAAA ATTCACCAAACAAGACCTTTGTCAAGGTTTATAAGTCAGGGTCCTTCGGAAGATCATTAGATATCACTAAATTCAGCAGCTACCACGAACTGCGTAGTGA GCTTGCTCGAATGTTTGGTCTTGAAGGTGAGCTGGAGGACCCTCTGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGAGAGAATGACGTTCTTCTCCTT GGTGATGGCCCTTGGCCGGAGTTCGTAAATAGTGTGTGGTGTATCAAGATACTTTCGCCTCAAGAAGTGCAGCAGATGGGCAACACCGGCCTTGAGCTTC TGAACTCTGTTCCAATTCAAAGGCTCTCTAATGGCATCTATGATGACTACATGAGCCGTCAGGACCCGAGAAGTCTAAGCACTGGAATAATAAGTGTGGG ATCATTAGAATACTAAATGATGTGACTGTCAATACTATGACACTTCTATCTCTTGTAATATTACCCTTGCTTCTCAACCTTTTGTCCATGGTGGGAAGTG CTGCCTAAATTTAGTTCTATAGTCCTACTCTTTAGCCTTTTTGTTTTCCTGTTTTTCCTGCTAGGATTATTCATAAATATGATACTGTAACTATATGGCA TCTTGTTATTGTGCTAGCTACAATATATACCATACTTAATCCGTTAGGAAATCAATGTGTGAAGATAGTTCCTTCTTAAAGTTACATAACTTCATTTCTA ATCTTGCTTTGGCTCAAATGGTTGTGTTGCTTGACTTGACTTAGTATTTTGGACGATGGTAGAATCTCTCTTTTTCTAGAAAATATGGTAAAATGTTGGT TTGAGCATCTTTTAAGGAGACCATTGAGGTCCTTTGTTGGGAGAGTAGATCAATGGAGGTTACTCCATTCCTTAGAGGTAGAGGGGTGATAGAGTGTTAT GACATTATTAATTTATATGAGTCAGAACTATATTGTTATTGTATGTCTTATGGTAGACATTGGATGTGATATTTAAGTTTTTGACCTTAATGATTTGGCT GCTTTGCATTTTAGCATTGCAGGCACCATGCACCATCTAATTTTGCCTATTATAATCAATTTTTTGTAGTATGGAAAGAAAGAAGAATACGCAAATTATG ATATTCTCCTCAGAACTCATAGGAACCACCACTTTTCGATGGTCACCCCCACCTCATGGATAATTGTCTCTACCCTTGACTACACGCCCAAGTCAATATA GTACCAAGCCACCATGAGCTACTATGTTCTGGACCAAATCATGGATTATTGGCTGAAATGGTGGCCTTGGTTGCACATCCGGAATAAGGATGTTTTGAAC TGGCTAAGATATGACAGATTCGAAGGTGAAGCTCAGAGATGCAAGCAGCGGTCAATCTTAACGGTTGTAGGTTGTAGATTTCAATTATGATTGAAGCTTA TCGCCGCAAAGCTTTTAGCAGTAATAGCGGTTGACAATGGTGAGTCTCGGTACAACGATATTATTACCTTGTGATGTGAGGTTATGTTTTCAACAAATAG ATTGGGAACATAACCCCATATCACAAAATTAGAGATGTGTTGGATGATGGTGCATTCCTAGTGGTTGGGTTGGGGTTAGATGAGTAAAGGTGAACATAAA A
• Tissue: pods
• Gene name: LI_gene_180514;
• Additional information: details;

Expression of Ll_transcript_516494

FPKM

• PAB: 29
• PNAB: 29.7
• PS1: 7.8
• PS2: 5.5
• PS3: 7.4
• PW1: 36
• PW2: 34.7
• PW3: 20.8

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_516494

• Blastp: Auxin response factor 6 from Oryza sativa with 64.91% of identity
• Blastx: Auxin response factor 6 from Arabidopsis with 85.29% of identity
• Eggnog: auxin response factor(ENOG410YA3R)
• Kegg: Link to kegg annotations (4328406)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019419302.1)
• Pfam: B3 DNA binding domain (PF02362.20)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;