Ll_transcript_516474

• Id Trinity: TRINITY_DN50857_c0_g2_i7
• Name Transcript: Ll_transcript_516474
• Sequence: GCAAAATAGTGAAACTTCTCTCTCTCCTTTGAAAAAATCTGACACAGTCTTAAAAAGCTTCCCCAAAGTAATGGCAGTTGTGTTCTCATTGATTGATGCT CTGTGTAAGAGAGAGAAAGAAAAAGGGTAAAGCAACAGTAACAGTAACAGTAACATAGTATTAGTAGAACTGTAGAACATAGCATAGCATAGCCACCAAG TACTTCACTAAGAATCACTGTAATATCAGTACTAATCAATCACAAACCATAACACTATAAACCTCAACAACATTAAATCACTTCTTTTCATTCTCTTTTC CATTACAGGAAATGACCCAAACTCTAACCTCATCACTTCTCAGCTTTGTTTCTGTGTCTCCCCCTTCCTTTCATACCCAAGTATAGAAAAAGTACATAGA ATACCATAACTACTGCAAAAACTTGATCTTTTTTCAACTCCATTTCTTATCTTTTCTGGGTTTTTCTTCATTCTCTGAGATCCTTTCTCTTCTGCTGGTT CATTGCTCCTTTGAGATCTGTTTGTTTTTTCAAGTTTGTTCCTTTATTAATCTTACCGGGAAGAAGAAGAAGCTACGTATCTTTTGTTACTTGGTGTTGT GTTGGTTCTGAAAGAATAGATATTGTAGCATGAAGTGTTCAGTTGAAGATTGGAACTTGGGGTGTTGGGGGTTAACTGGAGTAGAAGCTAATGAGGCATA AAGCTATTGTCTTATGTAGTGATACTGGTTTTGGTTGAGAATTCAAGGGTGGGAATCTTGTGGATTTTGTTTAGATTTGAATGGGTTTTGGTTTGTGAAT GGGATTAGAGGACTAATAACAAGAATGATATTCTGCAATTGAAAGTGTTGTGGGTGTCATTTTCTCACAACTTTGTTGCTTAATTGGTCTACTTAAGAAG TGTGTTTTGGAATCATTGATTGTGGGCTCAAATTTAAGGTTCTACAAATTGCTTTTTCTTTTTTGCTCAAATGAGACTTTCTTCAGCTAGTTTTAGTCCT CCACCCCAAGAAGGGGAAAAGAGATGTCTAGATTCAGAACTTTGGCATGCATGTGCTGGACCTCTTGTTTCATTACCAGCACTTGGAAGCCGTGTGGTTT ACTTTCCACAAGGTCACAGTGAGCAAGTGGCTGTGTCAACCAACAAGGAAGTGGATGCTCATATCCCGAACTATCCGAGCTTACCACCGCAACTCATTTG TCAGCTTCATAATCTGACTATGCATGCTGATGTTGAGACCGACGAAGTGTATGCGCAGATGACCTTGCAACCTCTGAATCCTCAAGAGCAAAAGGAGGCA TATCTTCCAGCAGAGTTGGGCACTCCAAGTAAACAGCCAACAAACTACTTCTGTAAAACATTGACGGCCAGTGACACAAGTACTCACGGGGGATTCTCTG TACCTCGTCGGGCTGCTGAAAAAGTGTTTCCTCCATTGGACTTTTCCCAACAACCTCCATGCCAAGAGTTAATTGCAAGGGATTTGCATGGTAATGAATG GAAATTCAGGCATATCTTCCGAGGTCAGCCCAAAAGGCATCTTCTTACAACAGGATGGAGTGTTTTTGTGAGTGCTAAAAGACTTGTTGCTGGTGATTCA GTGCTGTTTATCTGGAATGAAAAGAACCAATTGCTTCTTGGTATCCGGCGGGCTAATCGACCACAAACTGTGATGCCTTCATCAGTTTTGTCAAGTGACA GCATGCACTTGGGGCTTCTTGCTGCAGCAGCTCATGCAGCTGCAACAAATAGCCGTTTCACCATTTTCTATAACCCACGTGCCTGCCCATCAGAATTTGT AATACCCTTAGCAAAATATGTTAAAGCTGTGTATCATACTCGAGTCTCAGTTGGTATGCGCTTCAGGATGTTGTTTGAAACAGAGGAGTCAAGTGTGCGG CGATACATGGGTACAATAACTGGCATTAGTGACTTGGATCCTGTCCGGTGGCCAAATTCACATTGGCGTTCAGTCAAGGTTGGTTGGGATGAATCCACTG CAGGAGAGAGGCAACCTAGAGTGTCTCTATGGGAAATTGAGCCACTAACAACCTTTCCCATGTATCCATCGCCATTCCCCCTTAGGCTTAAACGACCGTG GCCTCCAGGACTGCCTTCATTCCATGGCATGAAGGATGAAGATTTTGGCATAAATTCTCCAATGTTGTGGCTTCCAGACTCTGATAGAGGGCTTCAGTCT ATTAATTTTCAGGGGATGGGAGTTAATCCTTGGATGCAACAAAGGTTTGATCCCTCCATGCTGAATATGCAAACAGATATGTATCAAGCTGTGGCTGCTG CTGCGCTCCAAGATATGAGGACTGTAGATCCTTCGAAACAACATCCGGCTCCCTTAGTTCAATTTCAGCAACCACAGAACTTACCGAATAGGACTGCGGC TTTAGTGCAGGCCCAGATGTTGCAGCAATCACAGTCGCAGCAGCAGGCTTTCCAAAACAATCAAGAGAATCAGCAGTCATCTCAATCTCAGGCACACACT CAGATGCATCTTCAGCAGCAGCTACAGCATCAGCACTCATTCAATAGTCAGCATGGCCGTCATCACAACAAGCAGCAGCAACAAACTCAACAACAGCAGC AGCAGCAGGTACCACAGCAAATGGTAGATAATCAGCAGATTTCCAATGCCGTCTCTACAATGTCACAGTTTGTTTCGGCACCTCAATCTCAATCACCACA TATGCAAGCTTTCGTTTCACTGTCCCAACAACAAACATTTTCTGATTCCAGTGGGAACCCTACCACTATTGTTTCTCCCCTGCACAGTATCTTGGGTTCA TTTCCCCAGGATGAAAATTCCCACCTTTTGAACCTCCCTACAACAAACACTTGGGTTCCTGTTCAGACTTCAACTGCATGGCCTACTGCATGGCCACCCA CCAAACGTGTTGCAATGGATCCTCTCCTTTCTTCTGGAATATCTCAATGTGTTCTGCCGCAGGTAGATCGGGTAGGGCAGCCACTGAGTACCATGTCACA AAATGGTATTACATTGCCCCCGTTTCCTGGTAGAGAGTGCGCACTGGACCACGAAGGGAGCAATGATCCACAAAACAATCTCTTATTCGGTGTTAATATA GAGCCCTCATCACTTCTAGTGCGAAATGGAATGACAAACCTTAAGGGAGTTAGCAACAACAGTGACTCCTCAACCATGCCATTTCAATCTTCTAATTTCC TCAATAACATAGGCACTGATTCTTCATTGAATCCTGGAATGACACATAGCATTGGTGATTCGGGCTTCCTGCAAACCAAAGAAAATTTGGGGCAGGGAAA CTCATCAAACAAGACCTTTGTGAAGGTTTATAAGTCAGGGTTCCTCGGAAGATCATTAGATATCACTAAATTCAGCAGCTACCATGAGCTACGCAGTGAG CTTGCTCGTATGTTTGGCCTTGAAGGCGAGCTGGAGGACCCTCTGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGAGAGAATGACGTCCTTCTCCTAG GCGATGGCCCTTGGCCGGAATTCGTAAATAGCGTATGGTGTATCAAGATACTTTCACCTCATGAGGTGCAGCAGATGGGAAACACTGGCCTTGAGCTTTT GAACTCGGTTCCAATTCAAAGGCTCTCTAATGGCATCTATGATGACTACATGAGCCGTCAGGACGCAGGAAGTTTAAGCACCGGAATAACAAGTGTGGGA TCTTTAGAATACTAGATGGTGTGACTGTCAATACTATGCCATTTGGTCTATCTCCTGTAATATTACCATTACTTCTCAACCCTTTTCCCATGGTGGGAAG TGCTGCCTAAATGTAGTTTTATAGACCTACTACCCTTTAGCCTTTTGTTTTCCTGTTTTTCCTGCTAGGACCATTCATAAAACTGATCTTGTAACTATAT GACATAAGACATATTCTCATTGTGCTAGCTACAATATATACCACACTTAATCTCCCTTAGGAAATCAATGTATGAAGATAGTTCTCTCTTCTGACATGAC TTTATGTTTATCTTGTTTTGGCTAAAATAAATTGGGCTTGCATGACTTGATTGAGTATGGTAGACTATGGAGG
• Tissue: pods
• Gene name: LI_gene_180514;
• Additional information: details;

Expression of Ll_transcript_516474

FPKM

• PAB: 13.3
• PNAB: 23.6
• PS1: 4.3
• PS2: 1.5
• PS3: 2.7
• PW1: 14.3
• PW2: 20.5
• PW3: 7.7

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_516474

• Blastp: Auxin response factor 6 from Oryza sativa with 64.71% of identity
• Blastx: Auxin response factor 6 from Arabidopsis with 85.54% of identity
• Eggnog: auxin response factor(ENOG410YA3R)
• Kegg: Link to kegg annotations (4328406)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019439673.1)
• Pfam: B3 DNA binding domain (PF02362.20)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;