Ll_transcript_516363

• Id Trinity: TRINITY_DN50872_c0_g1_i10
• Name Transcript: Ll_transcript_516363
• Sequence: CAAAATCTTCAACTTATTTGCATTCTTCAATTCTCAACGTTTTCTCTTTTCTTCATCACTTTCACTAATGCTTTTCATACTACTACTTATTACTCATCTT CATCCATATATGCATCTCTCACACTACAATTTTCAATTTTACATTTTTTACCATTTTACCCTATATCTCTTCTTTACAACACTTTTTTTGTTGCGCACTT GCTTCTGGATTTTTGTTAGTTCTGGTTCATTATTTATCTTTTAAAATAAGAAAATTTATTTTTCAAATTCAAATAATTCTTTTACAATTTGAATAAATCT ATCACTAGTGGTAAAATTTAAAAGAAACAAATATTATGCCTTATTTTACTAATTTAAACTAGGAAGTATTATCAGTGAAATGGATTTTTATATATTTCAC TTTCTAATTATAAAATTAAGTATATTTATGAAAATATTGAATGTTGTGTTTGAAATTATGAAACGAAGTTTGTGATAATGATATTATTTTATAGGAAGAA AGTGAGTTTGTGTTTAATAAACCGTAAAGTGAGCATGTAGAGTGTATTATAAGGCTTCTTATTCACATGAGAGTATAAGGCTGGGAATATCTACATGTTT AGACCCAATTTCATGAATAGTTTAATTGGATTATTCTATGTGATGTTAATATAGTTGAAAAAATGGTGGGTTATGAGCTAGAGAGAGTGCAATTATGTAA ATAGTAAATTGTAAAAGCAGAAAAGTCCCTTTCATGCTGGTTTTATATGTCTTTTCCCACTTTACCTGTCTATATATCTTTACCGGTCTTTGCAAAACTG TCTTTTCCAAATTCTGGATAATTTGAATATAACAAACTAGAGCCTTCGAGTTCCAAATTATTGTAGAGCTTCTTCCCTAGGAAAATATTTTGTGCCGGTT TGTAGTTGCAATTTTGTAGCTAATATGTTTTCTGTGTTTTATTCCAGCAGGTCGAGTATCTTGAATTAGAGAAGTTTAGAGATGGATTCTGTTACGTTCT AAATTTCTTCGTCGTACGCACAAAAGTTTTACCAAATATGGAAACTAATCATTCAAAAGCTGAAGAGTTCAAACTCCTTGCCAATGAAGCATTCGGTGCT CGGAAATATGCCCAAGCTATTGAGCTATATACAAAAGCAATTGAACTGAACAGTCAAAATGCAGTTTACTTGGCCAATCGTGCCTTTGCCCATCTCCGGC GTGAGGAATATGGTAGTGCAATACAAGATGCTACAAAAGCGATTGAAGTTGATCCTAAATATTCGAAGGGTTATTACAGGCGAGGTACTGCTCATCTTGC CATGGGAAAATTCAAGGAAGCACTGAAAGATTTTCAGCAGGTCAAGAAATTGTGCCCAAATGATCCTGATGCTACAAAGAAATTGAAGGAATGTGAAAAA GCTGTTATGAAACTTAAGTTTGAAGAAGCAATTGCTGTTCCAGAATCTCAAAGGCGTTCAGTTGCCGAATCCATAGATTTCCACTCTATTGATGTGGAGC CACAATATTCAGGAGCAAGAATAGAGGGGGATGTTGTTACTTTGGATTTTGTGAAGAATATGATGGGTGATTTCAAGAATCAGAAGTTCTTACATAAGCG TTATGCATTCCAGATTGTTTTGCAAACACGAGAGATATTGCGAGCCTTGCCTTCTCTTGTGGATATAAATGTTCCTACTGGCAAACTTTTTACTGTCTGT GGTGATGTGCATGGTCAGTACTATGATCTCTTGAATATTTTCGAGCTTAATGGGCTTCCTTCAGAAGATAATCCTTATCTATTTAATGGGGACTTTGTGG ATAGAGGATCCTTTTCTTTGGAAGTCATCCTCACTCTGTTTGCATTTAAGTGCATGTCTCCTTCAGCGATTTATCTAGCTAGAGGAAATCATGAGAGCAA GAACATGAACAAGATATATGGTTTTGAGGGCGAGGTGCGCTCAAAATTGAATGAAACATTTGTGGAACTGTTTGCGGAAGTATTCTGCTGTTTACCTTTG GCTCATGTGATAAATGAGAAAGTTTTTGTAGTTCATGGAGGTCTATTTAGTGTTGATGGGGTCAAACTCTCTGATATCCGAGCAATTGATCGGTTTTGTG AGCCTCCAGAAGAAGGATTGATGTGTGAATTGCTTTGGAGTGATCCACAACCTCTCCCTGGAAGAGGTCCAAGCAAGCGGGGCGTAGGTCTTTCTTTTGG TGCGGATGTGACAAAAAGGTTTTTGCAAGAAAATAATCTAGATTTAGTTGTGCGATCTCATGAAGTAAAGGATGAGGGTTATGAGATTGACCATGATGGT AAACTCATAACAGTTTTTTCTGCTCCAAATTATTGTGACCAGATGGGTAACAAAGGTGCCTTTATTCGATTTGAAGCACCTGATTTGAAGCCTAAGATCG TAACATTCTCTGCAGTGGCACACCCTGATGTGAAGCCAATGGCTTATGCAAACAACTTTCTTCGGTTATTATCATAATTTATATAGCATTATAGCTGACT ATAAGTGATGGTTGTTTATGCTGTTTTTGTGCTCTCTCTGTCCTGCCCCTAAGGGCAAGATTTTGAAGGTTGCTATAGCGTTTCTGATTAGTGCCTTCTT TTGTTTTTGGTTTTGTAGATTATTAAAATTGAAATTCACTTTCCCTCGTTCAAATATTGCACTTTTATTTTTATGGTTTTTATCATTGGGTGAACACATG TTGGGAAAACTTTAGTAATGTTCATCAGCATCATAAAACTCTAGTACATGGATGACCATACTTATTATATAAAATTTGAACTATTTAATAAAGTAAATTT CAACTTTGGTTGTTAAAGGAGATATT
• Tissue: pods
• Gene name: LI_gene_180642;
• Additional information: details;

Expression of Ll_transcript_516363

FPKM

• PAB: 50
• PNAB: 29.7
• PS1: 22.8
• PS2: 17.3
• PS3: 22.6
• PW1: 26.4
• PW2: 27.2
• PW3: 28.2

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_516363

• Blastp: Serine/threonine-protein phosphatase 5 from Lycopersicon with 92.1% of identity
• Blastx: Serine/threonine-protein phosphatase 5 from Lycopersicon with 92.1% of identity
• Eggnog: -
• Kegg: Link to kegg annotations (543849)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019461786.1)
• Pfam: Tetratricopeptide repeat (PF13181.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;