Ll_transcript_516366

• Id Trinity: TRINITY_DN50872_c0_g1_i13
• Name Transcript: Ll_transcript_516366
• Sequence: CAAAATCTTCAACTTATTTGCATTCTTCAATTCTCAACGTTTTCTCTTTTCTTCATCACTTTCACTAATGCTTTTCATACTACTACTTATTACTCATCTT CATCCATATATGCATCTCTCACACTACAATTTTCAATTTTACATTTTTTACCATTTTACCCTATATCTCTTCTTTACAACACTTTTTTTGTTGCGCACTT GCTTCTGGATTTTTGTTAGTTCTGGTTCATTATTTATCTTTTAAAATAAGAAAATTTATTTTTCAAATTCAAATAATTCTTTTACAATTTGAATAAATCT ATCACTAGTGGTAAAATTTAAAAGAAACAAATATTATGCCTTATTTTACTAATTTAAACTAGGAAGTATTATCAGTGAAATGGATTTTTATATATTTCAC TTTCTAATTATAAAATTAAGTATATTTATGAAAATATTGAATGTTGTGTTTGAAATTATGAAACGAAGTTTGTGATAATGATATTATTTTATAGGAAGAA AGTGAGTTTGTGTTTAATAAACCGTAAAGTGAGCATGTAGAGTGTATTATAAGGCTTCTTATTCACATGAGAGTATAAGGCTGGGAATATCTACATGTTT AGACCCAATTTCATGAATAGTTTAATTGGATTATTCTATGTGATGTTAATATAGTTGAAAAAATGGTGGGTTATGAGCTAGAGAGAGTGCAATTATGTAA ATAGTAAATTGTAAAAGCAGAAAAGTCCCTTTCATGCTGGTTTTATATGTCTTTTCCCACTTTACCTGTCTATATATCTTTACCGGTCTTTGCAAAACTG TCTTTTCCAAATTCTGGATAATTTGAATATAACAAACTAGAGCCTTCGAGTTCCAAATTATTGTAGAGCTTCTTCCCTAGGAAAATATTTTGTGCCGGTT TGTAGTTGCAATTTTGTAGCTAATATGTTTTCTGTGTTTTATTCCAGCAGGTCGAGTATCTTGAATTAGAGAAGTTTAGAGATGGATTCTGTTACGTTCT AAATTTCTTCGTCGTACGCACAAAAGTTTTACCAAATATGGAAACTAATCATTCAAAAGCTGAAGAGTTCAAACTCCTTGCCAATGAAGCATTCGGTGCT CGGAAATATGCCCAAGCTATTGAGCTATATACAAAAGCAATTGAACTGAACAGTCAAAATGCAGTTTACTTGGCCAATCGTGCCTTTGCCCATCTCCGGC GTGAGGAATATGGTAGTGCAATACAAGATGCTACAAAAGCGATTGAAGTTGATCCTAAATATTCGAAGGGTTATTACAGGCGAGGTACTGCTCATCTTGC CATGGGAAAATTCAAGGAAGCACTGAAAGATTTTCAGCAGGTCAAGAAATTGTGCCCAAATGATCCTGATGCTACAAAGAAATTGAAGGAATGTGAAAAA GCTGTTATGAAACTTAAGTTTGAAGAAGCAATTGCTGTTCCAGAATCTCAAAGGCGTTCAGTTGCCGAATCCATAGATTTCCACTCTATTGATGTGGAGC CACAATATTCAGGAGCAAGAATAGAGGGGGATGTTGTTACTTTGGATTTTGTGAAGAATATGATGGGTGATTTCAAGAATCAGAAGTTCTTACATAAGCG TTATGCATTCCAGATTGTTTTGCAAACACGAGAGATATTGCGAGCCTTGCCTTCTCTTGTGGATATAAATGTTCCTACTGGCAAACTTTTTACTGTCTGT GGTGATGTGCATGGTCAGTACTATGATCTCTTGAATATTTTCGAGCTTAATGGGCTTCCTTCAGAAGATAATCCTTATCTATTTAATGGGGACTTTGTGG ATAGAGGATCCTTTTCTTTGGAAGTCATCCTCACTCTGTTTGCATTTAAGTGCATGTCTCCTTCAGGTAAGCCCTGAATGTCTACCAGTCTATCATATTT TATAGATACATTATGAATTTATCTCTTGAGCACCCCAATACGTGTTAAGAATTGTTAGAATCAAAAGGATGCTCTTAATTGCATTGTAAGTTCTAACTTA TGTTTCCTTTTGAAATTGACTCATAAATTGTTATTTTTAGTTCTGTTGTTTGTTCAATTGAATTTGCATGAATCCTTTGGTACTCCTTTCTCACTTTCTG AGAGACCCTCAGTAATAATCTATTTTCCTCTGGGATATCATCTTATTTTCTTGTCATATAACTTTCAGCGATTTATCTAGCTAGAGGAAATCATGAGAGC AAGAACATGAACAAGATATATGGTTTTGAGGGCGAGGTGCGCTCAAAATTGAATGAAACATTTGTGGAACTGTTTGCGGAAGTATTCTGCTGTTTACCTC TGGCTCATGTAATAAATGAGAAAGTTTTTGTAGTTCATGGAGGTCTTTTTAGTGTTGATGGGGTCAAACTCTCTGATATCCGAGCAATTGACCGGTTTTG TGAGCCTCCAGAAGAAGGATTGATGTGTGAATTGCTTTGGAGTGATCCACAACCTCTCCCTGGCAGAGGTCCAAGCAAGCGAGGTGTAGGTCTTTCTTTC GGTGCAGATGTGACAAAAAGGTTTTTGCAGGAAAATAATCTAGATTTAGTTGTGCGATCTCATGAAGTAAAGGACGAGGGCTATGAGATTGACCATGATG GTAAACTCATAACTGTTTTTTCTGCTCCGAATTATTGTGACCAGATGGGTAACAAGGGTGCCTTTATTCGATTTGAAGCACCTGATTTGAAGCCAAACAT CATAACATTCTCAGCAGTGGCACACCCTAATGTGAAGCCAATGGCTTATGCAAACAACTTTCTTCAGTTATTCTCATAATTTATAAAGCTTTGCAGTTGA CTATACCTTGTGCTGGTTTTTTCTGTGCTTGCCCCAAGGGCAAGATTTTGAAGGTGGCTATAGAAGATCACATCACGTTGTGGTAACTCATGTTGTTTAT TTTTTGGGTTTTGTAGATTATTAACATTAAAGTTCACTTTCCCTAGTCAAATGTTGCACATTTATTTTTTTGACTTTTATCATTTGGTGAACATAAGTAA TGTCCATCTGCTTTGTGAAACTCCAGTATATGATTCACAGTGCTTTGGCATATTTATGGCCATTCAGTTGCTCTATTTTACTATGTTTCCTCTTCAATTC ATTAGCCTTGATCTTTGGTTTGAGTTTTTTACCTTGGATATTTGTCACAACCTTTGAAATTTCAACTTGTAAAAGTAACTTAGGTCTTTACTTTATAGTA TTTTTTACACTACAAATGTATCATTCACCATTCAAATATTAACCATAATGATCC
• Tissue: pods
• Gene name: LI_gene_180642;
• Additional information: details;

Expression of Ll_transcript_516366

FPKM

• PAB: 2.8
• PNAB: 6.8
• PS1: 5.3
• PS2: 4
• PS3: 4.9
• PW1: 4.8
• PW2: 5.2
• PW3: 3.6

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_516366

• Blastp: Serine/threonine-protein phosphatase 5 from Rattus with 54.38% of identity
• Blastx: Serine/threonine-protein phosphatase 5 from Lycopersicon with 93.63% of identity
• Eggnog: serine threonine-protein phosphatase(COG0639)
• Kegg: Link to kegg annotations (65179)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019461786.1)
• Pfam: Tetratricopeptide repeat (PF13181.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;