Ll_transcript_516378

• Id Trinity: TRINITY_DN50872_c0_g1_i24
• Name Transcript: Ll_transcript_516378
• Sequence: GAATAGGTGAGAGTATAAAAAGTTTTAATGAATAAGGATTCTGAGTACTGTAAGCATGATAGGAAGAAACAGATTCTGATGTAGAAGAGTAGAAAGTTGT TAGTCCACGAAGCGGCGTTGAATCGATGATTAATAATTAGGTCATAGATCCACTTCTTTCCCTTTCCATCCACTTCCTTCATCTCCGTCGAGCATTGTGA AGAAAAGGAGTGAGAAGTTTGATTCTGTTTTTTTTCTGGATTTCACTGTATACAACAAAAGTTTCACCCACTATGGAAGCCGAAAAATCTAATGTTTCAA AGGCGGAAGAACTAAAGCTACTAGCCAATGAAGCATTCAGTGCCCGAAAGTATTCTCAAGCTATTGATTTATATACACAAGCAATTGAGCTAAGAAGTCA AAATGCAGTTTACTGGGCTAACCGTGCGTTTGCCCATATCCGGCTAGAAGAATATGGTAGTGCAATAGAAGATGCTACAGAGGCTATTGAAGTTGATCCT AAGTATTCAAAGGGTTATTATAGGCGAGGTGCTGCTCATCTAGGGCTGGGAAAATTCAAGGAAGCACTGAAAGATTTTCAACAGTTCTCTCTTTCGGGGA GCTCATTGTGGCATTCTGCAAATAGAAGCTGTCTTGTCAATTCACTTCCTCACATTTACTGTTCTGTAACATGTACTTTTGCCCATATGCAAGCACTTTT GATTTAATATACTTATATTGATTAGGTTAAGAAAATGTGTCCAAATGATCCTGATGCAACAAAGAAATTGAAGGAATGTGAAAAAGCAGTTATGAAACTT AAGTTTGAAGAAGCAATTGCTGCTCCGGAGGCTGAAAGGCATTCAATAGCTGAATCCATAGATTACAAGTCTATAGGAAAGAGCCGCAATTCTTCGGTGC CCACCAAAATGGCCATAGCGGCAGTGACAGTAGCAGTTATGGCAGTGGTGGTGATGTTGTTCAGGTCATCAATGACCATAATTGTTGCTGCAATTGTGGT TGGTTTGCTGTTGCTCCTTGGGGCATTTAGGTGGAGTGGCCACAATACTGATGTCGAGTCACAATACTCAGGAGCAAGAATAGAAGGGGATATCATTACT TTAGATTTTGTGAAGAAAATGATGGACGATTTCAAAAATCAGAAGTGCTTACATACACGGTATGCATACCAGATTGTGTTGCAAACTAGAGAGAGATTGC AAGCTCTGCCTTCTCTTGTTGATATAAATGTTCCTGATGGCAAACATTTTACCGTTTGTGGCGATGTGCATGGTCAGTTCTATGATCTTTTGAATATTTT TGAGCTTAATGGGCTTCCTTCAGAAGAGAATCCATACCTATTTAATGGTGACTTTGTGGATAGGGGATCTTTTTCTTTGGAAGTCATCCTCACTTTGTTT GCATTTAAGTGCATGTCTCCATCAGCTATATATCTAGCTAGAGGTAATCATGAGAGCAAGAGCATGAATAAGATATATGGTTTTGAGGGTGAAGTGCGCT CGAAGTTGAATGACTCATTTGTGGAACTATTTGCGGAAGTATTCTGCTCTTTACCTTTGGCTCATGTGATAAATCAGAAAGTTTTTGTAGTTCATGGAGG CCTTTTTAGTGTTGATGGGGTCAAACTCTCTGATATCCGTGCAATTAATCGGTTTTGTGAGCCTCCAGAAGAAGGGTTGATGTGTGAATTGCTATGGAGT GATCCACAACCTCTCCCGGGAAGAGGCCCAAGCAAGCGTGGCGTAGGTCTTTCTTTTGGAGCAGATGTAACAAAAAGGTTTTTGCAGGAAAATAATTTAG ACTTAGTTGTGCGATCTCATGAAGTAAAAGATGAGGGTTACGAGGTTGATCATGATGGTAAACTCATAACTGTTTTCTCTGCTCCAAATTACTGTGATCA GATGGGTAACAAAGGTGCATTTATTCGATTTGAAGCACCGGATTTGAAGCCTAACATTATAACATTCTCTGCAGTGCCACACCCTGATGTCAAGCCAATG GCTTATGCAAACAACTTCCTTCGGATGTTTTCATAGCGAATAGAATTGTGCTGCTTAGAATCTCTGTTGTGCCCTAAGGGCATGGATTCAGAATGTGGCT AGAGAAGATGTGGTAAATGTTATTCATTGTTGTTATGTATAATATTCGTGACAACATTTTATTAGTATCCATTTTTTTGTCCCTCCAAATGTAACAAGCT GTTGATTAGATTTGACTCAGTTTGAGATTGAATTGGGATATTTGTTTATAAAACAGTCTATTTTTGCTTTAGTGAACTAATTATGTGTTACACTCCC
• Tissue: pods
• Gene name: LI_gene_180642;
• Additional information: details;

Expression of Ll_transcript_516378

FPKM

• PAB: 1.3
• PNAB: 0.1
• PS1: 0.5
• PS2: 0.2
• PS3: 0.5
• PW1: 0.4
• PW2: 1.1
• PW3: 0.6

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_516378

• Blastp: Serine/threonine-protein phosphatase 5 from Lycopersicon with 80.09% of identity
• Blastx: Serine/threonine-protein phosphatase 5 from Lycopersicon with 73.63% of identity
• Eggnog: -
• Kegg: Link to kegg annotations (543849)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019426308.1)
• Pfam: PPP5 TPR repeat region (PF08321.11)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;