Ll_transcript_514124

• Id Trinity: TRINITY_DN50876_c0_g2_i16
• Name Transcript: Ll_transcript_514124
• Sequence: ATACGAATTTGTTCGTTGACATTATATTTATATTTAAACATTATGCTGCTTAGGACAATGTCTACTTGAATTTAATTTCTGTTTTACCTCTCTGTGAAGG TATTCTTTGCTTTAAAAAAGGGAACTCAGTTAGTTAAGTATAGTCGGAAAGGGAAGCCAAAATTTTGTCCATTCAGGCTCTCACCGGATGAAACATCACT GATTTGGATTTCTCGCGGAAAGGAAAAGAAACTGAATTTATCTTCTGTTACACGAATCATCGCTGGACAGAGAACAGCTGTCTTTAGAAGATATTTGCGC CCTGAAAAGGATTATCTGTCATTTTCACTTATTTACAGAAAAGGGGAACGATCACTTGATTTGATCTGCAAGGACAAAGTTGAGGTTGAGGTATGGTTTG AAGGCCTCAAGGCATTAATTTCTACTGGAACGCGTATTAGGCGCACTAGAAGTGACTTTACTGATGATAGCATTGACTTGGGTCAGAATGACCGTCCTTC CTTTGGGACACTAGATTTTACTTCAAGCATTGTTCGTGGTAGGTTTTCAGTTGACTCAGATGTAGGGCCAGAACGTGCAAATGTGCCAATAAGGACAAGT ATTGGAGATGGTTCCCGTGTTAGTGTGTCAAGTATTGGCTACGCAAGTAGTGTAGCATCAGGACCAGATGACTTCGAGTCTCTAGGTGATGTTTATATAT GGGGAAAGGTTTGGACAGACGGGATTTCATCTGATGGGTTGGGGAGTCAAGTCCCTTCTAAGATAGATGTTCTTGCTCCTAAGGCATTGGAATCTAACGT CGTTATTGATGTTTATCAGATAGCTTCTGGTGTACGTCACATTGCTCTAGTTACAAGGCAAGGAGAGGTTTTTACTTGGGGAGAGGAATCTGGTGGAAGA CTTGGTCATGGGTCTGATAAAGATTTTTGTCAGCCACATCTTGTGGAGTCCCTGGCAATGACTAGCGTGAGTTTTGTTTCATGCGGTGAATTTCATACTT GTGCTGTATCTACATCTGGTGATCTTTACACCTGGGGTGATGGGACACATAATGTTGGACTTCTCGGTCATGGCACTAATGTTAGTCACTGGATACCAAA GAGGGTCAGTGGCCCTTTAGAAGGACTTCAGGTTGTATCTCTAGCTTGTGGCTCATGGCATTCAGCATTGGCAACTTCCAATGGCAAATTGTTTACCTTT GGTGATGGAAGATTTGGTGTGATGGGCCATGGTGATCGAGAGAGTGTGTTATATCCAACGGAGGTACAATTATCGAGTGGACAAAAGGCTATTAAGGTCG CGTGTGGAGTATGGCACACAGCAGCCATTATAGAGGTAACGGATCCGTCTGTTTCAAATGCTTCATCCAGAAAGCAGCTCTTCACATGGGGTGACGGTGA CCAATATCGTTTGGGACATATTAACAAGGAAACCTACCTTCAACCGACTTGTGTATCTACGCTTGCTGAATATGATTTTCAGCAGGTAGCATGTGGGAAC ACTATGACTGTCGCACTCACTCTATCTGGTCATGTCTTTATTATGGGTAGTAATGCATACGGCCAAATTGGAAATCCTCTCTCTGATGGAAAAGTGCCAA TTCTTGTCCGAGATAAGTTGGTAGGTGAGTGTGTGGAGGAAATATCATGTGGATCACATCATGTTGCTGTGTTGACTTCAAGAAGTGAACTATATACTTG GGGGAGAGGCGCCAATGGAAGATTGGGACATGGAGACATCGATGACCAGAAATCTCCAAAATTGGTAGAAGCCTTCAAAGATAGGCATGTAAAGAATATT TCATGTGGCTCTAACTTTACAACTTGTATATGCATACATAAATGGGTCTCTGGAGCAGATCAATCTCTTTGTACTGGTTGTCGGCAACCTTTTGGTTTTA CTAAAAAAAGGCATAATTGCTATAATTGTGGATTGGTGCATTGCCATGGTTGTAGTTCCAAAAAGGCAATGAAGGCAGCGTTGGCTCCAACACCAGGAAA ACCGCATCGTGTATGTGATAATTGTTATGCAAAACTAAGTTCTGTCTCTGAGACTGGTGCTTTTTTTAATAAAGAAGCTACTCGTCCACGTAGTTCCATA CATGGAAGCGAAAGGCTTCCCCGGGGAGAAGTAAGGTCTTCAAGAACACTCTTGTCTCCCATCACAGATCCAGTAAAATACCTTGAGATAAGAACTAGTA AGCCTGGAAGTAAACATGACTCTTCTTCTATAGTCCGAGCTTCTCAAGTTCCTTCACGTTTACAATTGAAAGATGTTGCATTTCCAAGTTCATCGAGTAC AATGCAGAATACTTTCAAGCCTGTTATATTTCCAAGCCAACCTACAATCCAACCTCCAGCTCCAGCTTCACCAGTTATTTCAAGACCTGCATCGCCATAT TCAAGAAGACCAAGCCCGCCACGTTCCACCTCCCCTGGATTTTCGAGAAGTCTTATTGATAGTTTAAAGAAGAAAAATGAACTTTTGAATCAAGAAGTCT CAAAATTGCAAAAACAAATTCGAAATTTGAAGCAGAAGAGTGACATGCAAGAAATGAAGATTGAACAGCTACAGAAAAATGTTGAGGGAGACGCCTCATT GGCCGGACAGGAATCTTCTAAGCATAGAGTAGCAAAGGAATTTATTAAGTCCATGAAAGATCAGTTGATCGAAGTGACTGAGAAGTTTCCATCTGATATG TCTGGAAGTGAAACCTTGAGAACCATGCAAGCTCAAGCTAAAGATTTTCTTGAAGAAAAAACAGAATTTGAATCTACTTCCCTCGCACCGAGCCTCGAGT CTGTGCAACAAAGTGCAGCCGATATACCTGCTTCCGAGAGTGACTCTGCTGAACTGCAAGAACATAGACCGGAAGAAAATGCTGCTGCTGCTGTTGCTGA GGCCAATCCATCAATAGATGAAGGAAATGTTCTTCAAGAAAGGAGCAGACTATTCGAATCTAGTACAGAAGTGCCTATACCAACTTCAAGTAGTTCAACA ACAATTGACTCACATAAATGTGGGAAAGAAGGAGAAACATCAGTAATTGAACAATTTGAGCATGGTGTGTATATCACTGCCATAGTACTACCTAGTGGTG CCAAAGTATTCAAGCGAGTTAGATTCAGTAAGCGAAAATTCGATGGGCATCAAGCGGAAGAATGGTGGAACCGGAACAGAGATCTGGTGTACAAAAAATA TAGTCCAGCAGGTACTAAGGATGCAGCAGGAACTGGTTCATCTGCAACACTGCCACATTCTGAAGACAATGTTGAGGCATCACCTTCTAAAATGTAGCTT TTTTATCTGCATAGGCTTCACCATACTCTCATGAAGTGATATAAAATCAGAAGCAGATTCAATCTACTAAGTGGAAACAAATCTGTATTAGGTAGGTTAG TGCAAAAACTCTACAGCATTATATACTGGTCTAGATAAAACCTGCAAGAATCAAATTGATTTCTTTCTACCATACTATCCGGACTATCCGGATTTCTTTC TACCATGCTATCTGGACTATCCGGATTTCTTTCTACCGTAGTATCTGGACTATCCGGATTTCTT
• Tissue: pods
• Gene name: LI_gene_180664;
• Additional information: details;

Expression of Ll_transcript_514124

FPKM

• PAB: 0.3
• PNAB: 0.1
• PS1: 0
• PS2: 0
• PS3: 0.3
• PW1: 0
• PW2: 0
• PW3: 0

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_514124

• Blastp: PH, RCC1 and FYVE domains-containing protein 1 from Arabidopsis with 49.08% of identity
• Blastx: PH, RCC1 and FYVE domains-containing protein 1 from Arabidopsis with 48.85% of identity
• Eggnog: regulator of chromosome condensation(COG5184)
• Kegg: Link to kegg annotations (AT1G76950)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019431965.1)
• Pfam: Regulator of chromosome condensation (RCC1) repeat (PF13540.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;