| Id Trinity | TRINITY_DN50886_c4_g2_i1 |
|---|---|
| Name Transcript | Ll_transcript_515497 |
| Sequence | AGGAATTCATTTGTCTCACATGTCTCTACAAAATCAGTGAAGAAACTAGAACTAGTCTACACTGATGTTTGTGGTCCATTTGAAGAAAACTCTATTGGAA GCAATAGGTACTTTGTGACCTTCATTGATGATCATACCAGAAAGATATGGATCTATCCAATGAAAAGGAAAAGTGAGGTGCTGGAAATCTTCAAGAGGTT CAGATCACAAGCAGAGAAACAAAGTGAGAACAAGTTGAAACAACTTAGATCAGATGGAGGAGGAGAGTATGTATCCACTGAATTTCATGAATTCTGCACA AAAGAGGGAATTGTTCATGAGATTGTTGCTCCATACACACCACAACATAATGGAACAGCAGAAAGGGCTAACAGGACTATCCTCAACATGACAAGATGCA TGCTGAAAACAAAGAGTTTGCCAAAGATGTTTTGGGCAGAAGCTGTTTCTACTGCTGCATACATCCTTAACAGATGTCCAAGTAGCAGATTAAACAACAA GACTCCAGAAGAAGCATGGACAGGCCTAAAACCAAGTGTGAAACACATGAGAACATTTGGATGCATCTGCTACAAACATGTTCCTGAAGTCAAGAGAAAG AAGTTAGATGATAGAGGGGAAAGACTCATCTTCTTAGGATATCACTCAACTGGAGCCTATAGGGTATTTGATCCTGAGAAGAATAAGGTGATGGTGAGCA GAGATTTGAAGTTTGATGAGGATCAATGCTGGACTTGGAATCTCAAAGAATCTGAAGGAATCAAGAACACACTACTACAATTTGAGAATGCAGAAGAGAA CTTGATTGAATCAGAAGATGTCACAACAATTGAGGTAACCAATTCCACAATCAATCCATCAACAAGACAGAGACAAAGGCAGCCACCATCAAGACTGAGT GACTATGAGATTTTTCCTGACTCAACCATAACAGCAGAGGGTGATTTTGTGCATATGGCACTTCTTGCTGAAATGGAACCAGTAAAAGTAGAAGATGCTC TACAACAATCACACTGGATTGAAGCAATGCAAGATGAGCTGGTGTCAATAGAAAGAAACAAGACATGGAGTTTGATGGACCTGCCAAAGGGTAAGAAAGC CATAACAGTAAAATGGGTGTACAAAACCAAACTCAATCCTAATGGTGAGGTATCCAAATATAAGGCCAGATTAGTAGCAAAGGGATACTTGCAAAAGCAG GGTCTTGATTATGATGAAGTGTTTGCCCCTGTGGCAAGGTTGGAGACAGTAAGGCTTGTAATTGCAATAGCAAGCCATCAAAGCTGGGAAATTCATCAAA TGGATGTGAAGTCTGCCTTCTTGAATGGTCCACTTGAGAAGGAAGTCTATGTGACTCAACCACCAGGCTTTGAGGTAAAAGGAAGAGAGGAAATGGTGTT CAAACTTCATAAGGCCCTTTATGGACTCAAACAAGCTCCAAGAGCTTGGAACAAAAGGATTGATGCATTCCTAACTCAACTTGAGTTTGTGAAATGCACT GCAGAATATGGAGTATATGTGAAAGGAAATGGCATCACAGACCTATTAATTGTATGCCTCTATGTTGATGACTTGTTGATAACAAGTTCAAGCATTGAAG ACATAACAACATTCAAACAACAAATGCATTCAGAATTTGACATGTCTGATCTTGGACAGCTAGCATACTTCCTAGGCATTGAGTTCAAGAGGACAGAAAC TGGAACTTTTATGCATCAAACTAAGTATACTATGGATGTGCTAAGAAGGTTTGAAATGATAGGCTGCAACTCAATTTCAACTCCTGCTGAGTCTGGAATT GCAGTAGCTCAAGCCTCTGAAGAACAGCATGAGGTTGACAAGACCTGGTTTAGGCAGATAGTTGGGTCACTAAGATATATTTGCAATACAAGACCTGACA TTGCTTATGGTGTAGGCTTGGTAAGCAGATACATGGAGGACCCTCAACAATCTCACATGGTGGCTGTGAAGAGACTGTTAAGGTATTTGAAGGGGACAAT TGGCCTTGGCATCAATTTTCCTTCAAAACAAAGCTGTCTCAGTGATACAAAGCTAGTTGGATTTACTGATGCAGATTGGAGTGGGGATAAGGTGGATAGG AAAAGTACTTCAGGCTACCTATTCAGTTTTGGTGAAGCTCCAATAAGATGGTGTTCCAAGAAACAAGATGTTGTGGCTTTATCTTCTTGTGAAGCTGAGT ATATAGCAGCCTGCATGTGCACTTGTCAAGCTGTTTGGATGAGAGTTCTGCTTGGTGAATTGAAAATCAGAACAGAAGAAGGTATTCTCTTGAAAGTAGA CAACAAATCAGCAATAAACCTTGCAATGAATCCAGTTTCTCATGGTAGAAGCAAACACATAGAAACTAGATTTCATTACATAAGGGATCAAGTGAGCAAA GGTGTTGTGAAGCTGGAATTTTGCAGGTCTGAACAAC BLAST |
| Tissue | pods |
| Gene name | LI_gene_180757; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_515497
| Blastp | Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 40.58% of identity |
|---|---|
| Blastx | Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 40.31% of identity |
| Eggnog | - |
| Kegg | - |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_020987654.1) |
| Pfam | Integrase core domain (PF00665.25) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |