Ll_transcript_388942

• Id Trinity: TRINITY_DN50910_c4_g1_i11
• Name Transcript: Ll_transcript_388942
• Sequence: ATAAAATATATATTTGAAGCAACGGGGAGAGAAGCGCAAAACGCATTGGTATGTTATTTATATGGGTGAATTTGGGGTTTTTTGGTGTGTTGAATTAGGG CTCAATCAGTGAGTCTTTTTGTATGATCCGGCGAATTTGATCTTGATTGGGTCGTTTTCAGTGTGAAAAAGTGGAAATCTAGGGTTTTGATTGAGAAAGA AAGATGAAGGGTGGTGCGATGGATCGGACGAAGGTGGTGTTGCGGCACTTGCCTCCTTCCCTTCCCGAATCTGCTCTCTCTCAACAAATTGACGCCGCCT TCTCTGGTCGTTACAATTGGCTCTCTTTCCGTCCTGCCAAATTCAGAAGCCAGAAGCATGTATCGTATTCTCGAGCCTACATTCAGTTCAAGAGTCCCGA TGACGTTTTAGATTTTGCTGATTTCTTTAACGCTCACGTCTTCGTTAATGAAAAGGGTGCTCACTTCAAAGTCATTGTTGAATATGCTCCTTCACAACGT GTTCCAATTCACCGTTCCAAAAAGGATGCTCGTGATGGAACCATTTACAAAGATTCTGAGTATCTGGAATTCCTTGAGCATCTCGCCAAGCCTGTTGAGA ATCTTCCCAGTGCCGAGATACAATTGGAGAAGAGGGACGCGGAACGATCTGGTGCTGCAAAGGATATTCCTATAGTTACCCCACTGATGGACTTTGTGCG CCAGAAAAGAGCTGCCAAGGGACCTCGGGTATTTTTGCATTGGATTAATTCATCATCTTTCAAACAAATATATTTGCCGTCACTTGTCATTTTGTCTCTT GCGTGTCTATGGATGTGTCTATGGGCCGAGAAAATTAAATCCCTGACAAATATCCTTCATTATTACGTTTTACCTTTAAGTGCCATTGGTTTCTTGCTCA CCGTAGTTAGAATTGGTTGTATCGTACAAATCAAATTCTGATCTGTTGCGTGTCATGGGACTGCCAAATGCCAATACATAACTCTTGAGCTTGATAAATC AATTTGACTCTTGAACCCCTCGAGAATTGTCGGTATCGCGGCAAAGTGATTCAGAGACGATCCACTGGAAAATTGGTCGCTCTCAATAAATGGTCAGGTC ACACATATTTGTTTATGAAAAACCAGATTTTTAGGGACAGGAAGTGGCAGTGAGAAATAATTGAAGAAGATAGAGGGTGAGCCTTGGTAAAACGGTAAGG TTTCTACTCACTGACTATGAGGTCATGGGTTCGAATCCTGGAAGCAGCCTCTGAGCTTGTAGGGTAAGAAAGTGTACATCTACCCGACTATCCTCCCCAG ACTCCCTAGGTGTGAGCCTCATGCACAGACCACCTTTTTTTAGAGAAATCCTAATATTTAATGCACCTCGAAGTTAGAAAACAAGAAAATAAAAATAAGG AAGTTATTACAGTGCTTAGGAAATGAGAAAAACAATAATTTCTATATATAAAATAAAGAACTAAAACTATATCACATTAATGTTGGTAAAAAGGAAATAG AAGGAAAAAAATATTATTTCTATATTTTTTATAGTTAAACATGTGAAAATATGTTATATGTTGTTTTTAACACCTGATTATGTATCTTATGTTTTGATTC ACAATTCCAAAAAATAGACTTTCTGATTCGTAATTTGAATCCCGATGTATAGGCATGGTTTTGCTTCCATAATGTACATGATGTTTGTGCAGAGATCAAT TTCTAATGGAAAAGTGAGTAGAAAAGCTGGCACATTGTCAAATGGAAGTTCTAGCTCTGCTACATCAAGACGAGGTTCTGGAAAGAAGAGGGTTCCCACT ACAATGTATGTTGCAAGGAACCCGGGCAAAAGTTCAACTATAAAAGACAAATCAACTTACACTTCGGTTCCCAGGCAAGGTGATCAGCATCTTTCAAATA AAACCTCAACCATGGGTTCTTCAGATGGAACTCAAACACTTGATGAAAATGCTGGAGCATCTGGGAGTAATGATGCTGGGAAGAAGAAAATCCTGCTTCT TAAAGGGAAGGGACGGGAGGCAATTACAATATCTGACTTTGACAGCATGTCACAGCATAAAAGCGTAACATCTTCAGCTAAAACAGCTCCTGATTCAACA GCTCTGAAGCGGAATCAACGGCCTGAAGGTACTGGACGGATTATCAGAAGAATACTCTCAAACAAAGATTTGCTTCAAAGTCAGTCTTCCAGGCCCCACG CTGAGCAGCAAATCCAAGCATCCAGTCTGGAAAAGGAAAAACAACCACCTCGCTCCTTACATGTTCCGACGATTTTGAAGAGCAGTAATGGGACACCAGA AAATAGGATTGGTGTGCGTGATTTACATGTTTCAAGTGAAAGGCAGGAGAGACGTGTTAGACATAGGGATAGACCTGATCGTGGTATATGGACAAATCGC TCTAATGGAGGTGATGATGCTTTGTCATTGTCTGCATCCTCACAAGCAGGAGGTAAAGCAGAGCTGAAACATGAGAGGCCAAATGCAGGAGGTGGGGAGC TAAAATCTCTTGGAGGTGGCCGTGCCAGTCATTCATCAGAAAATGGTTTCAGTAAGCATTTTGGTCGCCGTGGTCCACCACATGGAGTGAAGGATGTTGA TGATGACTATTCACTTTCAAGTGAGGGGAAGCCTCCTAGAAGAACTAGTGGCTCTGCTTATGGTTCCCATGAGGTACCAAAGTTTGATTTCTCCATGGCC ATGCATAATATTTCTTTTCTGGTTCAGTAATTGGTCATTATGTCTCCTTTATATTGCAGAAACAAGTTTGGGTTCAAAAAGCAAGTTCGGGGACCTAGAA TATTAAGTTGGTGAGACACATTGACATTCTCTTAATTAGGCCTGTAGTTGCATAGCTTGGAAAGATATTTCTTGATGAACCATAATTAGGATTTATCTAA CTGATATTCTTTATGACCTGACATTTCTCTCTGTGTAGCATTGACAATTTAGGGTAATATTTATGGTTATGAGTTCATTTTTCTATACATCTAGTTATCA TTGTTTTTTGTCAGTTTTGTAAAATGTTGTTTGAACTGTGACTGTGAAGTAGTTTTGTGGATGTTTTTTAATGGGCATGTCACATGTGGGTAAAATACGA ATTAGACTCCCCTCCAGTAATGGAGAGGACAGTTACCAAAAAATACATGGGAATTTCAAAAGTCAATGACATTTTATCCCCTTGATTTATTTAATATTAC TTTTTTGACCCTGAAAATGCATTAGAAAACTATCTGGCCTCTCCAGTACTGGAGAGGAGCCAGACCCGTAAAATACTTGTGGTTGACTTTCTTTAAATCT CTGCCTAGTTGCATACGTTCTGGTGCATTTCCTGCACTTTTTATAGTGGCCCTTCACTTTTTGAACCTTCCATAATACTAATTGAAATGAATATATCATG ATGCTTATTGACCCAATATGGAAAATCTTTGGTGTACTTTGCTCAAACTAGTGCTACTTGCTTTTCTTGTACTTGTATAAAGTTTGATGGTTTTTGCCTT TTGCAGTGGTAAGCTCTCTGACTTACAATTTTGGAGCACCCATTTGCTAGCTGCCCGATTCTGTCTCTTTTTGGTTGACAGATTCTTATAAGTAAATGAG CGTGGTAAAAAAATTCTTTTGCAAGAGAGGCAAGTACTGTGATCCATTTGAGTTGGCTTAAAATATTCAGACATGACTTCACTGAAGATGGCTCCGATAA GAGAGAAATGAAAGGAATGGTATCGAACTTCGGTCTCCCTTTTATATTGCCTGTTTGAAGAATTATGGATAGATTTGCATAGGATGGCAAGTTGACTGGG TTTATACACTATTTTCTTCACTAGTTTAAGTGTTAATATAAATCCGGGGCATTATATATAATATATATATATATATATGTGTTTCCTTAGTTCTTATATA TGTGTGTGCAATACAAGTGGGCACTTGCTTATGATCCTAGATAATTTTGGGACTACCTCCTCCTACTCATTACTTTGAAGGAATAGTCCATTTTACATGG ATGGCCGTGCAGGCTTCTGTTGACAGTGGAGTTTCTTGTAGAGTTCAGAGTTGGAAATACAATAGACGATGGTTACTAGTTACTACTAAGGAAATAATGT GTTGCAGGAATTATTAGTGTGTTGATATTCATGATTAGGCTCTAAATATCATTGTAGAAACAGTGTGGTCTTGCACTTCTCATCATAACACATCTGTTAC ATTACTGCTTCTTGAATCATATTATAATTTTATTTAATGCTTTTCATTCCCTTGTTGAAAAAAAA
• Tissue: pods
• Gene name: LI_gene_180930;
• Additional information: details;

Expression of Ll_transcript_388942

FPKM

• PAB: 6.7
• PNAB: 3.8
• PS1: 4
• PS2: 3.4
• PS3: 4.8
• PW1: 3.6
• PW2: 4.2
• PW3: 3.8

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_388942

• Blastp: Regulator of nonsense transcripts UPF3 from Arabidopsis with 33.61% of identity
• Blastx: Regulator of nonsense transcripts UPF3 from Arabidopsis with 66.87% of identity
• Eggnog: UPF3 regulator of nonsense transcripts homolog(ENOG41122XD)
• Kegg: Link to kegg annotations (AT1G33980)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019418458.1)
• Pfam: -
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;