Ll_transcript_388947

Id TrinityTRINITY_DN50910_c4_g1_i16
Name TranscriptLl_transcript_388947
SequenceGATGCAGTAACCGAGTTTGAAAAGTAAGGGAAGGGGCATGACACTTTCTTTCTTAGATGATGTTGTTGTTCACAACTTGACTTGGGATTCACAATGAAAA TAACTATCATAACAAAATCTTGCCACAATTTCACTTGTTTTCCCTTCAAATTGTAGTACAGAAAACTGTAGGACAACCACCTGCAATGCCAACATGTAAT GTAAGAATGAAATAATATATTAATTTGGATATACGCATGTATGTAATCTAATAATCTGACAGAAACAAAAGAATGTAAGAAAGTTAATAGAGAATTGGTG AAAGTAAAATTCCAATAATAAAAGATCATATGCTAAGATGGTTACTGTATATAAGGGTATGTGGTGTGAGTAGTTGAAGCAAGATGAATGTAATGGTTAC TATATAAGGGTATGATTGTAATTCCATGAAGTCTGATGGGTGTGATTGTAATTTAAAGAGTTACTAAAGATATAGGTAGAGATTTGGAATTTGATCGAAA GCGGAAAAGGCAAGGGATGACAAATTGGGGGTTTTGTGTTCAATTAGGGCTCGCTCTTTGCTCTTTGCTTTCTACACAACAATATCAATAGTCTCTCTTT CTTTCTTTCTTTCTTTCTTTGTTTCTCATCGGTTTAGTTATTATTAATTATTTAGAAAACAAAAAAACAAAAACATGAAGGGTCGGACTAAGGTGGTGTT ACGGCACTTGCCCCCTTCGCTTTCTGAATCCTCTCTCTTTCAACAAATTGATGCTGTCTTCTCCGATCGTTACCACTGGTTCTCTTTCCGTCCTGCCAAA TTCAGCCACAAGCATACATCATATTCCAGGGCCTACATTGACTTCAAGACTCCAGAGGACGTTATAGACTTCGCTCACTTCTTTAATGGCCACCTTTTTG TTAATGAAAAAGGAACCCAGTTCAAAGTCCTTGTTGAATATGCTCCTTCACAACGTCTTCCAACTCACTCCTCTAAAAAGGATGCCCGTGATGCTACCAT ATACAAAGATTCTGATTATCTCCACTTTCTTCAACATCTCGCCAAACCTGTTGAGAATCTTCCGAGTGCTGAGATACAGTTGGAGAAGAGGGACGCAGAA CGATCTGCTGCTGCAAAGGATGTTCCTATCGTTACCCCATTGATGGACTTTGTGCGCCAGAAAAGAGCTGCCAAAGGACCTCGGAGATCAATTTCTAATG GAAAAGTGAGTAGAAGAACTGTCACATCATCAAATGGGAGTCCTAGCTCTGCTGTGTCAAGACGAGGTTCTGGGAAGAAGAGAGTTCCCACTACAATGTA TGTTGCAAGGAACCCGGGCAAAAATTCTACTATAAAAGACAAATCAACTTACACTTCGGTTCCTAGGCAAGGTGATCAACATCTTTCAAATAAAACTTCA ACTGTCACTTCTTCAGGAGGAACTCAAACAGTTGATGCAAATGCTAGAGCGTCTGGAAGTAATGATGTTGGAAAGAAGAAAATCCTGCTTCTCAAAGGGA AGGAACGAGAGATAATTACTATATCTGAGTTTGACAGTATGTCACAACATAACAGCATAACATCTTCATCTAAAACTGCTCTTGATTCAACAGTTCTGAA GCGGAGTCACCGGCCTGAAGGTACTGGAAGGATTATCAGAAGCATACTTTCAAACAAAGATTTGCATCATAGTCAGTCTTCCAGGCCTCACTCAGAGCAG CAAATCCAAACATCCAATCTAGAAAAAGAAAAACAACCACCTCGCTCCTTACATGTTCCGATGATATTGAAGAGCACTAATGGGGCACCAGAGAATAGGA TTGGTATGCATGATTTACATGTTTCTAGTGAGAGGCAGGAGAGGCGTGTTAGGCATAGGGATAGACCTGATCGCGGTGTATGGACAAATCGTTCCAATGG GGGTGATGACTCTTTGTCATTGTCTGCATCCTCACAAGCAGATATTTTGGAAGGAGGTCAAGCAGAGCTGAAACACGACAAGCCAAATGCAAGAAGTGGG GAGCTAAAATCTCTTGGCAGTGGCCGTGCCAGTCATTCATCAGAAAATGGTTTCAGTAAGCATTTTGGTCGCCGTGGTCCAACACATGGGGTGAAGGATG TTGATGGCCACTCACTTTCAAGTGAGGGGAGGCCTCCTCGAAGAACTGGTGGCTCTGCTTATGGTTCCCATGAGAAACAAGTTTGGGTTCAAAAAGCAAG TTCTGGGACCTAGAATATTTAGATTGGTGAGACACATTTTCTTGATTCGGCCTGTAGTTGCATAGCTTAGGAAGATATTTGTTGATGAACCAAAATTAGG ACTTACCTAACCTCTTGGTGTGGCATTGGCATTTTAGGACAATATTTATGATTATGAGTTCATATTACTATACATCTAGTTATCATTGATTTTCTGTGTA GTTTATTATATAATATTTTGTCATTTAAATTATTGTTAGTTTTGTGAATTTTTGTTTGAACTGTAAAGTGGTTTTGCTGATCTTTTAATAGACATGTGAG TGAAAAACTTTCTGGCTTGATTTTCTTTAAATCTCTTGGTAGATCCATAAGTTCTGGTGCATCTCCCCTTCTTTTTCTAGTGGTCCTTCACATTTTCTAA CCATACCCTGGAAGTTGTAATGATAGATGATGTGGTTTTATATGTTTACTGACCCAATATGGAAAATCTCTGTTCTGTCCAACTGCTCAAATTAGTTGTA GCTATTTTTCTTGTATTTACTTGTGTCAAGTTTGATGATTTTGCCTTTTGCAGTGGTAAGCTTGCTGACTTACAATTTTGGAGCATCCATTTGCTAGCTG GCGGATTCTGTCATTTTGGTTGACAGATTCTTTTAAGTAAATGAGTGTGGTAAAAAAATTCTTTTATGACAGAGGCAAGTACTGTGATCCATTTGAGTTG TGGCTTAAAATATTCAGACATAACTTCACTGAAGATGGCTCCGAGTACAGAGAAATGAAAAGAATGGTATCAAAATTATTACGTGGTGTCCCTTTTTTAC AAGCTGTTGCCTGTTTGAAGAATGATGGCAAGTTGGGTGGGTTTATACACTATTTTGTGAAGTAGTCTTAAAGTGTAAATATAAATCCGGGGTATTATGT ATCTGTCTCCTAAGTTGTTATATGTATGGAAGTGGGCACTTGCTTATGATGTTGGATAATTTTGGGACATTACTCTGATGGAAAACTCGCAGGCTTCTTC TTCTGTTTACAATGGAGTTTGTTGTTGTAGGGTTCAGACTGGGAAATAATGTGTTGAGGGAGTTGTTACTGTGTGGATATTGATGATTATGCTCTAATTA TCAACTGTAAAGTGTGGTGTTGCACTTGTCAGCATGTTATATTGGTGATTCTTACATACCAATTTGATGAATTGCCAATGCACTTGTGTAGTTGTGGAGT GTGATGACATTGAAAACTATTGCTATATCACTCTGCTGTTTTACACTATTCGAATTAGTAATGCTATATAAACCATCTTGTTCTCCA BLAST
Tissuepods
Gene nameLI_gene_180930; 
Additional informationdetails; 

Expression of Ll_transcript_388947

Labels

PAB abscising pods
PNAB non-abscising pods
PS1 seeds stages 1-3
PS2 seeds stages 4-6
PS3 seeds stages 7-8
PW1 pods wall stages 1-3
PW2 pods wall stages 4-6
PW3 pods wall stages 7-8

Annotations of Ll_transcript_388947
BlastpRegulator of nonsense transcripts UPF3 from Arabidopsis with 43.32% of identity
BlastxRegulator of nonsense transcripts UPF3 from Arabidopsis with 59.07% of identity
EggnogUPF3 regulator of nonsense transcripts homolog(ENOG41122XD)
KeggLink to kegg annotations (AT1G33980)
CantataDB-
Mirbase-
Ncbi proteinLink to NCBI protein (XP_019440409.1)
PfamSmg-4/UPF3 family (PF03467.14)
Rfam-
GOLinks to GO: General; Genes and gene products; Annotations; Ontology;