Ll_transcript_388933

• Id Trinity: TRINITY_DN50910_c4_g1_i2
• Name Transcript: Ll_transcript_388933
• Sequence: ATAAAATATATATTTGAAGCAACGGGGAGAGAAGCGCAAAACGCATTGGTATGTTATTTATATGGGTGAATTTGGGGTTTTTTGGTGTGTTGAATTAGGG CTCAATCAGTGAGTCTTTTTGTATGATCCGGCGAATTTGATCTTGATTGGGTCGTTTTCAGTGTGAAAAAGTGGAAATCTAGGGTTTTGATTGAGAAAGA AAGATGAAGGGTGGTGCGATGGATCGGACGAAGGTGGTGTTGCGGCACTTGCCTCCTTCCCTTCCCGAATCTGCTCTCTCTCAACAAATTGACGCCGCCT TCTCTGGTCGTTACAATTGGCTCTCTTTCCGTCCTGCCAAATTCAGAAGCCAGAAGCATGTATCGTATTCTCGAGCCTACATTCAGTTCAAGAGTCCCGA TGACGTTTTAGATTTTGCTGATTTCTTTAACGCTCACGTCTTCGTTAATGAAAAGGGTGCTCACTTCAAAGTCATTGTTGAATATGCTCCTTCACAACGT GTTCCAATTCACCGTTCCAAAAAGGATGCTCGTGATGGAACCATTTACAAAGATTCTGAGTATCTGGAATTCCTTGAGCATCTCGCCAAGCCTGTTGAGA ATCTTCCCAGTGCCGAGATACAATTGGAGAAGAGGGACGCGGAACGATCTGGTGCTGCAAAGGATATTCCTATAGTTACCCCACTGATGGACTTTGTGCG CCAGAAAAGAGCTGCCAAGGGACCTCGGAGATCAATTTCTAATGGAAAAGTGAGTAGAAAAGCTGGCACATTGTCAAATGGAAGTTCTAGCTCTGCTACA TCAAGACGAGGTTCTGGAAAGAAGAGGGTTCCCACTACAATGTATGTTGCAAGGAACCCGGGCAAAAGTTCAACTATAAAAGACAAATCAACTTACACTT CGGTTCCCAGGCAAGGTGATCAGCATCTTTCAAATAAAACCTCAACCATGGGTTCTTCAGATGGAACTCAAACACTTGATGAAAATGCTGGAGCATCTGG GAGTAATGATGCTGGGAAGAAGAAAATCCTGCTTCTTAAAGGGAAGGGACGGGAGGCAATTACAATATCTGACTTTGACAGCATGTCACAGCATAAAAGC GTAACATCTTCAGCTAAAACAGCTCCTGATTCAACAGCTCTGAAGCGGAATCAACGGCCTGAAGGTACTGGACGGATTATCAGAAGAATACTCTCAAACA AAGATTTGCTTCAAAGTCAGTCTTCCAGGCCCCACGCTGAGCAGCAAATCCAAGCATCCAGTCTGGAAAAGGAAAAACAACCACCTCGCTCCTTACATGT TCCGACGATTTTGAAGAGCAGTAATGGGACACCAGAAAATAGGATTGGTGTGCGTGATTTACATGTTTCAAGTGAAAGGCAGGAGAGACGTGTTAGACAT AGGGATAGACCTGATCGTGGTATATGGACAAATCGCTCTAATGGAGGTGATGATGCTTTGTCATTGTCTGCATCCTCACAAGCAGGTACTTTGGAAGGAG GTAAAGCAGAGCTGAAACATGAGAGGCCAAATGCAGGAGGTGGGGAGCTAAAATCTCTTGGAGGTGGCCGTGCCAGTCATTCATCAGAAAATGGTTTCAG TAAGCATTTTGGTCGCCGTGGTCCACCACATGGAGTGAAGGATGTTGATGATGACTATTCACTTTCAAGTGAGGGGAAGCCTCCTAGAAGAACTAGTGGC TCTGCTTATGGTTCCCATGAGAAACAAGTTTGGGTTCAAAAAGCAAGTTCGGGGACCTAGAATATTAAGTTGTGGTAAGCTCTCTGACTTACAATTTTGG AGCACCCATTTGCTAGCTGCCCGATTCTGTCTCTTTTTGGTTGACAGATTCTTATAAGTAAATGAGCGTGGTAAAAAAATTCTTTTGCAAGAGAG
• Tissue: pods
• Gene name: LI_gene_180930;
• Additional information: details;

Expression of Ll_transcript_388933

FPKM

• PAB: 15.7
• PNAB: 13.2
• PS1: 19.8
• PS2: 11.9
• PS3: 16.2
• PW1: 13.8
• PW2: 15
• PW3: 12.9

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_388933

• Blastp: Regulator of nonsense transcripts UPF3 from Arabidopsis with 42.5% of identity
• Blastx: Regulator of nonsense transcripts UPF3 from Arabidopsis with 67.27% of identity
• Eggnog: UPF3 regulator of nonsense transcripts homolog(ENOG41122XD)
• Kegg: Link to kegg annotations (AT1G33980)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019418457.1)
• Pfam: Smg-4/UPF3 family (PF03467.14)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;