| Id Trinity | TRINITY_DN50911_c0_g1_i19 |
|---|---|
| Name Transcript | Ll_transcript_386411 |
| Sequence | TTCACGATCCGAAAATTTCTAAACACTGAAAACTTACAACCATCAAAATCTAATTTCACCACAATTTGGAATATTATTATATCTCTTTTAAGATTTTACG TTTGATTCTTCACAATCTTATCTCTGATTCTTTACCTTTTCTTATTTGGTTTTATCTTACCTGCAAAGTTTTAATCTTTGTCTCTTTTTGTTAATTTACC ATCTGGGTAAGTGAATTTGCGAGTGTTTTCTTCTTAAATGCTCAAAAGGGTGTTCTGGTTTTGATTGAACAAGCAAACATAGCAAAAGGGTTACCCCTAA ACATTTTAACGCTACCAGATGTCAGAAAATAGACACCCTCTCACGAATGCTGTTTCTAATCACTCTGGTGATAACATTGAAGGTGGTGTAGATTTCTATG GTGATTGATTTTCCTTAAATTTTCATCATGATTCATTGTTTTACTGGTTTTGATCATCTTTATATGATGCCTTTGTTATATTGTTTTGGTTGAGACTTGA GAATGCTGAATTGTTTTTGCTTGTAGATTTTGTTTAATTTATGATGGTTTTTCTATTTATAGTATGATGATGATTTCGATTGTTCATACATTGTATTGTC AGAACTTTGAAGAATTTTGGAATTAGTAAAAAAAAAATTCAGATATTTCTTTCTAGCCTATACAGAGTGATGTATATGCTTGATCGCACATGACTTTGCA AACTTTATGTGCTTTGCTTGATGATGCAACAAAAGGTTGCTTGCATGTTTTGATCTAAAGTCTTTTAGCCGGCAATTGTGTGCTTATTGAGGTGTGGTAG AATCACGCCTTTGGTTTGGGCCTGTTTCGACAAGACTGTTAGAAGCCCTGGTAGAGAGAGTAGATCAAATGGACTTAGTTCGATTTCTAGAGAAGAGGGT CAAGAAAAACCATAGTCAAAATGATTAGTAAAGATGTAAAAATCAAGGTTTTGTCAAAGAACATGATTTATTATACACTATGACGTTGTTTTATCCATGT TGTCGACCGACTTAGTGGGACCAAGGCTTGTTTGGTGTTGTTGTATGTTGAGACTTTGGATGGAGATATGACTTTCATTGTCTGGTTGCTATTTGATTTG TACTGCAGAAGCCGTTCTACGTTTGAATATCAATGATAACCAGGATAGAGATGCTGCTGCTCAATCAATTCCATTTCCAGAACGACCCGGTGAACCTGAC TGCTTATATTATCTGAGGACTGGAATGTGTGGTTATGGGAGTGCCTGCCGCTATAACCACCCTGCAAATGTTTCACTGGGTATTCATTATGGTGAAGAAC TCCCTGAGAGAGTTGGGCAACCTGATTGTGAGTATTTTCTAAAGACAGGGACGTGCAAGTACGGTTCGACATGTAAATATCACCATCCAAGGGACAGGCG AGGTGCTGCTCCTGTATCATTCAATTCGTTAGGCCTTCCCATGCGTCAGGTTTGTCCTTCCTATTGCAGCTGCTGCTCTATTTTTTCCAAACTGGTTATT ATTACTGTGCTTAATTGCTTATGAAAGATATGATTGTGGTTGCATTTTCCCTCCAACATTCTTTGGTTGTTGCTTTTAGGAAGAAAGGTCATGTCCCTAT TACATGAGAACCGGGTCTTGTAAGTTTGGAGTAGCATGCAAGTTTCATCATCCTCAGATTGGAGCTTCCCCTGTGGCTGGATCTCCGACCTCAACTATTC TTCCGACATCTGGTTTACCATATGTTGGTGGGTTTTCTGCATGGCAAATACCAAGAATGTCATATTTATCTGGGCAGGGTATTCAATCTTATGTACCTCC TTTTCTGTCTTCTCCACAAGGCATGATACCTGCACAGAACTGGAATACCTACATGGTCAGTTAAGGCTGTTGAATTTCCTATTTAGTATATGTATTTGCG GTATGCTCTAGTCTTTATTATTTTATTCCATACAGTGCTATCCTATCATTGATTGTGATGCTGACTGGTATGATTTCTCACAATGAAAGATCACATACAT GCAAGTTTTGGATAAGTGTATGTAGCATTAGCTGTTATCTACTTACTTGGAAGAACAGTGAGTTTGTCTGATATATCTAGATTAGGAAATCTTGCTACCA TCTTTTACTATCAGATTTCATAGACATTGCAAGATACTTTATACAGAAAGTGATTTGTGCATGACATTTATGTTATTCCTTAAGCTCCTCATTTTATTTG TTTATTGATTTCCAAGTGCATTTGACATTCATACACATTTTAATATCTGAAGCAGAATGTGCATTGTTCCTTAGGTAAGCTCTTCATAGCATGCATCTTC AGTGATAAATTGATAATTAATTATGTTCAATTTTGGTTATTAGATACTGTCAAGTGTCAATGGTACAATAATGCAACTTAGATTGACATTTTTTTTGTTT TGACTTTGATTTTCTTACTCATATTAGGGGAGTATGAGCGGGGCAATAACTACCGGTTTTCTTGGATCTAATTTTGCACCAGTTCTTGGTGGTCAGTTAA TAAGTCCAACTCTCCCGGAGAGACCTGGTCAGCCAGAATGTAAATACTTTATGAGCACTGGTACCTGCAAATATGGATCTGATTGCAAGTACCACCACCC AAAAGAAAGAATTAATCAATCATTGATGAATCCACTTGGTCTTCCTGTCAGACCTGGACATGCTATATGTTCTTATTATAGACTCTCTGGAATATGCAAG TTTGGCCCAACATGCAAATTTGATCATCCAATTTTGGCAATTCCTCAGAGCTATGGCTTGACCTCCTCACATGCTTTCTCTGTACCCGATACATCTCTGA TTAACGGTCGAAAAGTTTTATCAACTGTCCAACCACCCGATACATCTATATCTAAATTATCAAATGACAAGGTTCATCACTCTGATACAAAAGCTACCGA AAATTCATCCGAACAAGCTGATTCTACTACACTAGATTCCTTAGCAGCCACCTCGGAGTCGTAATTTAGATGACTAAACTGCTTCCAAGTTTGTTATTTT TTGGGGACATTTTTCCATATTTTAAGGACAGACAGCATATCATACATACCTCCTGTTCCCCCTTTTCACCTGCAATTCTGTGGAGTTGGATAGTTTGATA AGAGGTTGTTGTGACAAACACTTGCTTGTGGGGATATGAGGCATTTTTTTGTGGTGAATAAGATGCAGGTTGAAAGTTTGTGACTTTTACTTCTTTTTTC TTTTCCTTTCTGTTGGGGTCAATTTGGTGCATACTTAAAATGGAAGTACAAAACTCAGGAATCTAGGAAAACTCAACTGAAGTTTTTATCCCATTTTTAA GGGGTACCAAATTCATTATTGATATTTTTTTTTCCTTCTTTAGGGATCCATAAATTTTCATTTTATGTGACATGTTCTTGAAATTATGAGAAATAACTGG ATTCTTATATACTTGTTTCTTTTGCTAGAGAAATAATGCCCAATTGAACATAGGAGAGTTTTCTTTTTTAGTTTGGTAACCACTATTGTTGGGAGTCATA ATGTGGTCTGATATTGAAGATGGTGGTCTTATGGACCGGAGTGAAGGAGGTTATGGGTTCGAGTCTCACCATCAACAAAAAGTTTTGATGGCTAGAAAAG ACTCAGGTTTGATTCTTTTGTTGCACCACGTTGAATAGAAGCACGTGTTCTCAAGCTATACACGTTGGATAAGGAT BLAST |
| Tissue | pods |
| Gene name | LI_gene_180932; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_386411
| Blastp | Zinc finger CCCH domain-containing protein 63 from Oryza sativa with 43.97% of identity |
|---|---|
| Blastx | Zinc finger CCCH domain-containing protein 3 from Arabidopsis with 58.54% of identity |
| Eggnog | zinc finger CCCH domain-containing protein(ENOG410ZQFM) |
| Kegg | Link to kegg annotations (4350492) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019455851.1) |
| Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) (PF00642.23) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |