| Id Trinity | TRINITY_DN50911_c0_g1_i23 |
|---|---|
| Name Transcript | Ll_transcript_386415 |
| Sequence | TTCACGATCCGAAAATTTCTAAACACTGAAAACTTACAACCATCAAAATCTAATTTCACCACAATTTGGAATATTATTATATCTCTTTTAAGATTTTACG TTTGATTCTTCACAATCTTATCTCTGATTCTTTACCTTTTCTTATTTGGTTTTATCTTACCTGCAAAGTTTTAATCTTTGTCTCTTTTTGTTAATTTACC ATCTGGGTAAGTGAATTTGCGAGTGTTTTCTTCTTAAATGCTCAAAAGGGTGTTCTGGTTTTGATTGAACAAGCAAACATAGCAAAAGGGTTACCCCTAA ACATTTTAACGCTACCAGATGTCAGAAAATAGACACCCTCTCACGAATGCTGTTTCTAATCACTCTGGTGATAACATTGAAGGTGGTGTAGATTTCTATG GTGATTGATTTTCCTTAAATTTTCATCATGATTCATTGTTTTACTGGTTTTGATCATCTTTATATGATGCCTTTGTTATATTGTTTTGGTTGAGACTTGA GAATGCTGAATTGTTTTTGCTTGTAGATTTTGTTTAATTTATGATGGTTTTTCTATTTATAGTATGATGATGATTTCGATTGTTCATACATTGTATTGTC AGAACTTTGAAGAATTTTGGAATTAGTAAAAAAAAAATTCAGATATTTCTTTCTAGCCTATACAGAGTGATGTATATGCTTGATCGCACATGACTTTGCA AACTTTATGTGCTTTGCTTGATGATGCAACAAAAGGTTGCTTGCATGTTTTGATCTAAAGTCTTTTAGCCGGCAATTGTGTGCTTATTGAGGTGTGGTAG AATCACGCCTTTGGTTTGGGCCTGTTTCGACAAGACTGTTAGAAGCCCTGGTAGAGAGAGTAGATCAAATGGACTTAGTTCGATTTCTAGAGAAGAGGGT CAAGAAAAACCATAGTCAAAATGATTAGTAAAGATGTAAAAATCAAGGTTTTGTCAAAGAACATGATTTATTATACACTATGACGTTGTTTTATCCATGT TGTCGACCGACTTAGTGGGACCAAGGCTTGTTTGGTGTTGTTGTATGTTGAGACTTTGGATGGAGATATGACTTTCATTGTCTGGTTGCTATTTGATTTG TACTGCAGAAGCCGTTCTACGTTTGAATATCAATGATAACCAGGATAGAGATGCTGCTGCTCAATCAATTCCATTTCCAGAACGACCCGGTGAACCTGAC TGCTTATATTATCTGAGGACTGGAATGTGTGGTTATGGGAGTGCCTGCCGCTATAACCACCCTGCAAATGTTTCACTGGGTATTCATTATGGTGAAGAAC TCCCTGAGAGAGTTGGGCAACCTGATTGTGAGTATTTTCTAAAGACAGGGACGTGCAAGTACGGTTCGACATGTAAATATCACCATCCAAGGGACAGGCG AGGTGCTGCTCCTGTATCATTCAATTCGTTAGGCCTTCCCATGCGTCAGGAAGAAAGGTCATGTCCCTATTACATGAGAACCGGGTCTTGTAAGTTTGGA GTAGCATGCAAGTTTCATCATCCTCAGATTGGAGCTTCCCCTGTGGCTGGATCTCCGACCTCAACTATTCTTCCGACATCTGGTTTACCATATGTTGGTG GGTTTTCTGCATGGCAAATACCAAGAATGTCATATTTATCTGGGCAGGGTATTCAATCTTATGTACCTCCTTTTCTGTCTTCTCCACAAGGCATGATACC TGCACAGAACTGGAATACCTACATGGTCAGTTAAGGCTGTTGAATTTCCTATTTAGTATATGTATTTGCGGTATGCTCTAGTCTTTATTATTTTATTCCA TACAGTGCTATCCTATCATTGATTGTGATGCTGACTGGTATGATTTCTCACAATGAAAGATCACATACATGCAAGTTTTGGATAAGTGTATGTAGCATTA GCTGTTATCTACTTACTTGGAAGAACAGTGAGTTTGTCTGATATATCTAGATTAGGAAATCTTGCTACCATCTTTTACTATCAGATTTCATAGACATTGC AAGATACTTTATACAGAAAGTGATTTGTGCATGACATTTATGTTATTCCTTAAGCTCCTCATTTTATTTGTTTATTGATTTCCAAGTGCATTTGACATTC ATACACATTTTAATATCTGAAGCAGAATGTGCATTGTTCCTTAGGTAAGCTCTTCATAGCATGCATCTTCAGTGATAAATTGATAATTAATTATGTTCAA TTTTGGTTATTAGATACTGTCAAGTGTCAATGGTACAATAATGCAACTTAGATTGACATTTTTTTTGTTTTGACTTTGATTTTCTTACTCATATTAGGGG AGTATGAGCGGGGCAATAACTACCGGTTTTCTTGGATCTAATTTTGCACCAGTTCTTGGTGGTCAGTTAATAAGTCCAACTCTCCCGGAGAGACCTGGTC AGCCAGAATGTAAATACTTTATGAGCACTGGTACCTGCAAATATGGATCTGATTGCAAGTACCACCACCCAAAAGAAAGAATTAATCAATCATTGATGAA TCCACTTGGTCTTCCTGTCAGACCTGGACATGCTATATGTTCTTATTATAGACTCTCTGGAATATGCAAGTTTGGCCCAACATGCAAATTTGATCATCCA ATTTTGGCAATTCCTCAGAGCTATGGCTTGACCTCCTCACATGCTTTCTCTGTACCCGATACATCTCTGATTAACGGTCGAAAAGTTTTATCAACTGTCC AACCACCCGATACATCTATATCTAAATTATCAAATGACAAGGTTCATCACTCTGATACAAAAGCTACCGAAAATTCATCCGAACAAGCTGATTCTACTAC ACTAGATTCCTTAGCAGCCACCTCGGAGTCGTAATTTAGATGACTAAACTGCTTCCAAGTTTGTTATTTTTTGGGGACATTTTTCCATATTTTAAGGACA GACAGCATATCATACATACCTCCTGTTCCCCCTTTTCACCTGCAATTCTGTGGAGTTGGATAGTTTGATAAGAGGTTGTTGTGACAAACACTTGCTTGTG GGGATATGAGGCATTTTTTTGTGGTGAATAAGATGCAGGTTGAAAGTTTGTGACTTTTACTTCTTTTTTCTTTTCCTTTCTGTTGGGGTCAATTTGGTGC ATACTTAAAATGGAAGTACAAAACTCAGGAATCTAGGAAAACTCAACTGAAGTTTTTATCCCATTTTTAAGGGGTACCAAATTCATTATTGATATTTTTT TTTCCTTCTTTAGGGATCCATAAATTTTCATTTTATGTGACATGTTCTTGAAATTATGAGAAATAACTGGATTCTTATATACTTGTTTCTTTTGCTAGAG AAATAATGCCCAATTGAACATAGGAGAGTTTTCTTTTTTAGTTTGGTAACCACTATTGTTGGGAGTCATAATGTGGTCTGATATTGAAGATGGTGGTCTT ATGGACCGGAGTGAAGGAGGTTATGGGTTCGAGTCTCACCATCAACAAAAAGTTTTGATGGCTAGAAAAGACTCAGGTTTGATTCTTTTGTTGCACCACG TTGAATAGAAGCACGTGTTCTCAAGCTATACACGTTGGATAAGGAT BLAST |
| Tissue | pods |
| Gene name | LI_gene_180932; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_386415
| Blastp | Zinc finger CCCH domain-containing protein 3 from Arabidopsis with 54.8% of identity |
|---|---|
| Blastx | Zinc finger CCCH domain-containing protein 3 from Arabidopsis with 44.73% of identity |
| Eggnog | zinc finger(COG5063) |
| Kegg | Link to kegg annotations (AT1G04990) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019455851.1) |
| Pfam | RNA-binding, Nab2-type zinc finger (PF14608.5) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |