| Id Trinity | TRINITY_DN50912_c0_g5_i2 |
|---|---|
| Name Transcript | Ll_transcript_388338 |
| Sequence | GAGAAATGTGGTTGCAACTGTGAATGGTTACCATGGATTGGAGGATGGAATCAAAATCAATCACACACCTGGTCAGTTTATTTTGTTTGTGTCAGTGATT GATTTGAGTTGAATTTTGTAAGAGTGTTTTTTTTTTTAAAAATCTCGTGTAGCTTTTCAGAAAAGCCGAATTTCTGGTTTATTAGGAGTTTTTTATTTGT TAGCTTGTATCAATGGTGGATGTATGTTGAGTGTTTCAAGTTTGTGTGCTTGGGATGTGTATTCTGCTTCTCTATAAAAAAAAATAGATTAAAAAATCAC TTTTGATATTTAGATTTTTGTCTGGTTGGAATTTTACTTAAATGTAGAAGTTTAAAGAAGTTGATTCAGCTTTATGTGAAACTTTATTCACCAGTTTCTC AAAAAATCACTTTTTTAAGTGCATCTTAGAATTATTTTTTAAGGCTAAAGAAATGGACCTAATGTGGATGTGAGTTTTAACTGAAGAGGAAGGGTAAAGA ATAAGGAACAACTTGTTTGTTAGCTGAATGAGTGGGGGTGATTCTGTTTGATGAGTGTTTCTTTTGTATTTGAGTGATTAGGTTTGTTGGAAATTCGAAG GGAAAAAGTTTGATATTGCCCAAAAGCTCAACATAATTGTAGTCAACCACCGATGGAGTGAAGATTGCATAAGGGAAGGAAAGTGTGTACCAGAAGATTC TTATATTTGGCAAAGTGGTCATGAAGCCGGGCCACTGTTACTAAAAGATCCTCCACGCACTGTTCAAGCAAATAGCTTGAAAAAGAAGAAAGTGGTTAGT GACAGGTCATGTGATATTGGTTCTGAAAAGCAAACAACTGCCTCAAGTTCTGGTAGTCAGCACGTGGAGTTAAATTCTCATTCTTCTAGTCGATTGCGGA AACAGAAAAGAAATATGTGCAATGATAATGGAATTAGTACTGTATCTGGATCTTCTCGTAAAGGAAGAAGGCTAGCGAAAAATATTGTAGATGAAGTGTT CTTGGATTTAACCCGGGAAGAGGACCAACCTACCAGAGTAAATAGAGTACACACTGATGCTGCAGCTACCTCTAGTCATTCTGGTGGTGTCAATAACAAA AATAGTCTAGAAAATAGAGATGGGCTAGATGCCAGATTACGTAATCAAAGTGGAGCTATGAACATAGCTTCAGATGGCATTGAACAAATAATTGATTCAA ATAATGTATCTACCAATAGAAATTCAACTTTGTTAGAAGATTCTTTACCTATGGCACAAACATCAGTTTGTTTTAGTGCTGAGAATTCCACAGATAGTGG TCAGATTGATATTGTTGGTGCTTTACCTACTTCAAAAGAGCTGTCATGTGTTATATGTTTCGAAGAGTACAGCTCAACAAGAGGAATTTTGCCGTGTGGA CATCGGTATTGTTATACATGCATCCAGAGTTGGGTTGATCTTAGGACTTCAATGGGAAAAAGTTCAACCTGCCCGTTGTGCAAGGCAAGTTTTGTGATGT TCAAGAAAGTTGAGGATGCAGCCACTGGTGATCAAAAAGTATATTCCCAGACAATCCCATCTGGCAATTCAACCTCAGATATTTTTGTCCGCACGGTTCA AGAATTACCCGATTATGGTTTTGAGTCAGGTGCTTGCGTAATTTGCCGTGGTCGGGAACCTGAGGATCTGCTCCAGAGCTGTGACGTTTGCCGATGCCGA AGAATCCATCTGTATTGCCTGGACCCTCCTTTACTGCCTTGGACATGCAATCACTGCAAGGATCTTCGGAGGCTTTATCATCATCACTCTTATTAGTACT CATCTTTTAATCCATTGCAATGTGAGTCATCTAGTTTGCTAGTTCTTCCTGTTTTTGGATTTTGACATGAAAATATGCAACAGGGAAGATAGATTCAGAT ATAGAAATCCAATTCTTGATGAGAGTACTTAAGATGTTACAACAAGCCATTCCTTCTCTTCCTCTATTGAACAACAACATTGTCATTATGCAAGAAGATG AAGGATCCAACATAGGTAATGCATTACAATGCAATGAAATGATTGTTATTATCTAGATTAGTAACATTAAAAAACAAAAACAAAACTAAAGCAATTCTTC TAGCAAGGAATAAAGATCAAGACAAGGAAACAATACTAGTGTTATTAATACCGCACTGGTCATCAAATCTGGT BLAST |
| Tissue | pods |
| Gene name | LI_gene_180939; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_388338
| Blastp | - |
|---|---|
| Blastx | BRCT domain-containing protein At4g02110 from Arabidopsis with 46.94% of identity |
| Eggnog | - |
| Kegg | - |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019428742.1) |
| Pfam | Zinc finger, C3HC4 type (RING finger) (PF13920.5) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |