| Id Trinity | TRINITY_DN50918_c2_g1_i1 |
|---|---|
| Name Transcript | Ll_transcript_388950 |
| Sequence | ATTATAGAAAAAATATTTAACCTCAAATAGTCAAATTTATGCTATTCATGGACCATTTATTTTCTTCCTTACAATTGATAATGATAAAAAATCTCCTTGT TTACTTTTGCTTCATATTTTTTTAATTTTTATATTCTGCATTCTATCTGAATCTTCCCACTTGCATTTTCTTCTTCTCTGTGTGTGTTTTTTTTGTGAAA TGCTGAGAGACATTGATTTTGATCAAAGGGTCATTAGTTGTCTGAGAACAAGCTGAAAAGGAAAGAAGGAATGGAATCAGGTAGCGTTGATAATAGTCTA TCTTCATTGATCATGATGGATGAAGCTGAGAATCCACATCAGTTTTCTTCAATCACTACCAAGCTTCATAGTAATGGACCCACTGCTACTAGTGTCCACG AGCTTCTTGAATGCCCCGTTTGCACCAATTCAATGTACCCTCCAATCCATCAGGGTGTGGTGCTCTACTTGGATAACATCATTCTGTTGGATGAGACAAC TTAAATGGACATAGTTATTACCCCATCTTCTTCATACCAGTGTGTGGTAGGGCAAAGGTATGGTGTGAGTAGTGACTCTGTAAACCCCTTCTCTATCTAT CCAAGGGTCATGCGAAGGCCTTCAGTGTCCCTTCTGGTCAAGAATTAGGGCCTCACGAGTCACGATGAATGTCAATTTTTTTATCTCATGTCTTTCTTGA TTCATGGTTTGGTATTCTGGTTCATAGGCATAGAGGAACCACACCAATCCATCCCAAACTTGGTGCTCTACTGCAGTGACAATATTGTACGGGATGCCTT GCAGAAATGTAGCTCATAGAAGGCAATTTTTTTTACATTGCAGGACCTTTGCAGGATGCAATTCAGAATCAAGGAAAATTTTAGTTCAAAGGCTGTATAA CTTATGATTATTCCCTAGAAATTTTAGGGCTTCAATCAACCTCTGTAGATCAACCAGGAACTTATTTACGTTATCATGGCAATGGATATTCAGTCCATGG TTATGAGAGGAATCTATTGAGTGGTATTCTAAATAGGATGGTTTAGTATATAAGGATATTAAAAAACCATAAAGGACTAAAAGAAAAGCATGTCACGTGT AGCCATGGTAGCTAAGTACGCTGTCCAGGGAAGGACGGATAAGGCACAAATCTGACATGGGGATACGACAAAAGAAATATAGAATGTTAAAGAATATGGT TAGGAGTTCAACCAAATCTGATGATTTATTTAATGTCAGGCTTAACTTGTGCTTAAGTTTATTTCACAAATGATTACATCATGATTTATGACAGATTTTA TCTTTATTTTTGTGAGGAACATTTTAGATATCAAGTTTCTTGTCCTCATGGGAATACCGGTAAGTAGATAAATTTGTTTAAGGATGCCTATGATACAGTG ACTAATTCTCAAACCAATCCTTCTTTTTTTCCCGCAGTGCCACAATGGACATACCCTTTGTTCGACATGTAAGACAAGGGTACACAACAGGTGCCCAACT TGTAGACAAGAACTTGGTGATATAAGGTGTCTGGCATTGGAGAAGATAGCAGAATCACTTGAACTTCCTTGCCGATACATCTCTCTCGGGTGCCCGGAGA TATTTCCCTATTACAGCAAACTCAAACATGAGGGTATTTGTAACTTCAGACCCTATAACTGTCCTTATGCTGGTTCAGACTGTTCTGCCGTTGGAGATAT TCCATACCTTGTTGCTCATTTAAGGGACGACCATCGGGTTGATATGCATTCTGGATGCACTTTCAATCATCGCTATGTCAAGTCTAATCCCATGGAAGTA GAAAATGCTACGTGGATGCTCACGGTCTTCCACTGTTTTGGTCAGTATTTTTGTCTCCATTTTGAAGCCTTCCAGCTTGGTATGGCACCTGTTTACATGG CGTTCCTCCGTTTCATGGGAGACGAAAGAGAGGCACGGAACTACAGCTACAGCCTGGAGGTAGGAGGAAATGGACGGAAACTAACGTTCGAAGGGAGTCC GCGAAGCATTCGAGATAGCCATAAAAAAGTCAGAGACAGTCATGATGGCCTAATCATATACCGGAACATGGCGCTTTTTTTCTCCGGTGTGGATAGGAAA GAGTTGAAGCTAAGAGTAACAGGAAGGATATGGAAAGAACAGCAAAACCCTGATGGTGGAGTATGCATACCCAGCATGTGTGCTTAGGTTGATTGTTGCA TCTCTTGAATGTTATATCTAGCTGTAGATAATTTAATGTATCATCTCATTTGAATATCAAGTTTTTGAACATCTTATGTAACATTGCATACCTTTATCTT TGATTTTCACTTACTTCTTATGTTCTCTGTACACATATTTTAAGAATACATCAAAAAAGCAAAGAGATTCATAATTTCATATGCTGATGTTCAAGAAACA CAATTCTTTTGGTACAAGGTTTTAAAAAGTTGGATTGTAAACTTGTTTCTGAAGTGAA BLAST |
| Tissue | pods |
| Gene name | LI_gene_180989; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_388950
| Blastp | E3 ubiquitin-protein ligase SINAT5 from Arabidopsis with 87.76% of identity |
|---|---|
| Blastx | E3 ubiquitin-protein ligase SINAT5 from Arabidopsis with 86.75% of identity |
| Eggnog | - |
| Kegg | Link to kegg annotations (AT5G53360) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019424223.1) |
| Pfam | Seven in absentia protein family (PF03145.15) |
| Rfam | 5S_rRNA (RF00001) |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |