Ll_transcript_388968

• Id Trinity: TRINITY_DN50918_c2_g1_i11
• Name Transcript: Ll_transcript_388968
• Sequence: ATTATAGAAAAAATATTTAACCTCAAATAGTCAAATTTATGCTATTCATGGACCATTTATTTTCTTCCTTACAATTGATAATGATAAAAAATCTCCTTGT TTACTTTTGCTTCATATTTTTTTAATTTTTATATTCTGCATTCTATCTGAATCTTCCCACTTGCATTTTCTTCTTCTCTGTGTGTGTTTTTTTTGTGAAA TGCTGAGAGACATTGATTTTGATCAAAGGGTCATTAGTTGTCTGAGAACAAGGTGAGAAAACACAAAAAAAAAAAAAACGTTTTTTTTTATTTCTTTGGT TTCTGGTATCAACACAATAAAAACCCATCCTTTTTGCTCTTGTGTGTTGAAACTTACACAAAGGAATCATACCCAGATGAATATCAACTCACAACATTCC ATTCCACATCATTCTTATTTTTTCTGATGCATCTATCATTATTGGATTGTGTTTTGGTCTGTCTTATCCTTTGTTGTTCTTGATGTTGTCTTTTTAGCTG AAAAGGAAAGAAGGAATGGAATCAGGTAGCGTTGATAATAGTCTATCTTCATTGATCATGATGGATGAAGCTGAGAATCCACATCAGTTTTCTTCAATCA CTACCAAGCTTCATAGTAATGGACCCACTGCTACTAGTGTCCACGAGCTTCTTGAATGCCCCGTTTGCACCAATTCAATGTACCCTCCAATCCATCAGGA CCTTTGCAGGATGCAATTCAGAATCAAGGAAAATTTTAGTTCAAAGGCTGTATAACTTATGATTATTCCCTAGAAATTTTAGGGCTTCAATCAACCTCTG TAGATCAACCAGGAACTTATTTACGTTATCATGGCAATGGATATTCAGTCCATGGTTATGAGAGGAATCTATTGAGTGGTATTCTAAATAGGATGGTTTA GTATATAAGGATATTAAAAAACCATAAAGGACTAAAAGAAAAGCATGTCACGTGTAGCCATGGTAGCTAAGTACGCTGTCCAGGGAAGGACGGATAAGGC ACAAATCTGACATGGGGATACGACAAAAGAAATATAGAATGTTAAAGAATATGGTTAGGAGTTCAACCAAATCTGATGATTTATTTAATGTCAGGCTTAA CTTGTGCTTAAGTTTATTTCACAAATGATTACATCATGATTTATGACAGATTTTATCTTTATTTTTGTGAGGAACATTTTAGATATCAAGTTTCTTGTCC TCATGGGAATACCGGTAAGTAGATAAATTTGTTTAAGGATGCCTATGATACAGTGACTAATTCTCAAACCAATCCTTCTTTTTTTCCCGCAGTGCCACAA TGGACATACCCTTTGTTCGACATGTAAGACAAGGGTACACAACAGGTGCCCAACTTGTAGACAAGAACTTGGTGATATAAGGTGTCTGGCATTGGAGAAG ATAGCAGAATCACTTGAACTTCCTTGCCGATACATCTCTCTCGGGTGCCCGGAGATATTTCCCTATTACAGCAAACTCAAACATGAGGGTATTTGTAACT TCAGACCCTATAACTGTCCTTATGCTGGTTCAGACTGTTCTGCCGTTGGAGATATTCCATACCTTGTTGCTCATTTAAGGGACGACCATCGGGTTGATAT GCATTCTGGATGCACTTTCAATCATCGCTATGTCAAGTCTAATCCCATGGAAGTAGAAAATGCTACGTGGATGCTCACGGTCTTCCACTGTTTTGGTCAG TATTTTTGTCTCCATTTTGAAGCCTTCCAGCTTGGTATGGCACCTGTTTACATGGCGTTCCTCCGTTTCATGGGAGACGAAAGAGAGGCACGGAACTACA GCTACAGCCTGGAGGTAGGAGGAAATGGACGGAAACTAACGTTCGAAGGGAGTCCGCGAAGCATTCGAGATAGCCATAAAAAAGTCAGAGACAGTCATGA TGGCCTAATCATATACCGGAACATGGCGCTTTTTTTCTCCGGTGTGGATAGGAAAGAGTTGAAGCTAAGAGTAACAGGAAGGATATGGAAAGAACAGCAA AACCCTGATGGTGGAGTATGCATACCCAGCATGTGTGCTTAGGTTGATTGTTGCATCTCTTGAATGTTATATCTAGCTGTAGATAATTTAATGTATCATC TCATTTGAATATCAAGTTTTTGAACATCTTATGTAACATTGCATACCTTTATCTTTGATTTTCACTTACTTCTTATGTTCTCTGTACACATATTTTAAGA ATACATCAAAAAAGCAAAGAGATTCATAATTTCATATGCTGATGTTCAAGAAACACAATTCTTTTGGTACAAGGTTTTAAAAAGTTGGATTGTAAACTTG TTTCTGAAGTGAA
• Tissue: pods
• Gene name: LI_gene_180989;
• Additional information: details;

Expression of Ll_transcript_388968

FPKM

• PAB: 9
• PNAB: 4.4
• PS1: 5.6
• PS2: 4.6
• PS3: 7.3
• PW1: 5.5
• PW2: 6.1
• PW3: 12.7

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_388968

• Blastp: E3 ubiquitin-protein ligase SINAT5 from Arabidopsis with 87.76% of identity
• Blastx: E3 ubiquitin-protein ligase SINAT5 from Arabidopsis with 86.75% of identity
• Eggnog: -
• Kegg: Link to kegg annotations (AT5G53360)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019424223.1)
• Pfam: Seven in absentia protein family (PF03145.15)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;