Ll_transcript_388972

• Id Trinity: TRINITY_DN50918_c2_g1_i13
• Name Transcript: Ll_transcript_388972
• Sequence: ATTATAGAAAAAATATTTAACCTCAAATAGTCAAATTTATGCTATTCATGGACCATTTATTTTCTTCCTTACAATTGATAATGATAAAAAATCTCCTTGT TTACTTTTGCTTCATATTTTTTTAATTTTTATATTCTGCATTCTATCTGAATCTTCCCACTTGCATTTTCTTCTTCTCTGTGTGTGTTTTTTTTGTGAAA TGCTGAGAGACATTGATTTTGATCAAAGGGTCATTAGTTGTCTGAGAACAAGGTGAGAAAACACAAAAAAAAAAAAAACGTTTTTTTTTATTTCTTTGGT TTCTGGTATCAACACAATAAAAACCCATCCTTTTTGCTCTTGTGTGTTGAAACTTACACAAAGGAATCATACCCAGATGAATATCAACTCACAACATTCC ATTCCACATCATTCTTATTTTTTCTGATGCATCTATCATTATTGGATTGTGTTTTGGTCTGTCTTATCCTTTGTTGTTCTTGATGTTGTCTTTTTAGCTG AAAAGGAAAGAAGGAATGGAATCAGGTAGCGTTGATAATAGTCTATCTTCATTGATCATGATGGATGAAGCTGAGAATCCACATCAGTTTTCTTCAATCA CTACCAAGCTTCATAGTAATGGACCCACTGCTACTAGTGTCCACGAGCTTCTTGAATGCCCCGTTTGCACCAATTCAATGTACCCTCCAATCCATCAGGT ATGTGCTTTTTTCAATTTTACTTCATGGGTTGGTTTCACCAATTTTGTTCTTAATTTATGTTGACCTGTTGGTACCTTGTTTCTTTGTTTTTTAAAGTAT GATGATTGCTTTTGAAGTGTGCAATTGAGTTTAGGAATTATGGGTTGTGTTTTGTTCCATGGATCTTATGTTTGCTGGCATTTTAGTTTGAATAATTTGG GCAAGTTTGAATATTATAGGGGAAATAAGGGTCTTGGACGTTTCGGGGTTCCTTCTCATCTTTTTTCATGTTTACATAAGGTAAAGATGTAGTTATGTAA TCATGGATGAATTGGATGGAGCGAAGTTTGAGTTGAGCTCTTTTTCTTGTAAATCTAGTCCTTTTCTATTGGCACTCTGCTATAAGAATGCTTTGTGCCA TTAGCTTCATTCAATTTTAGAGCCTCATTTTATTCAAGTTAACTCATGTTTAGATTGCTTTGCAAAGTAAGCAGTGTGTCGGTGTAAATGGTTGCTCCAT GGTGCTTCCAACAATTTTCATTTGTGCTTCTTTTGGTGGTTTTGGTATGAGTGTGAAAAATAAGATACAATATGGTTTTGTTCACCCAGGGTGTGGTGCT CTACTTGGATAACATCATTCTGTTGGATGAGACAACTTAAATGGACATAGTTATTACCCCATCTTCTTCATACCAGTGTGTGGTAGGGCAAAGGTATGGT GTGAGTAGTGACTCTGTAAACCCCTTCTCTATCTATCCAAGGGTCATGCGAAGGCCTTCAGTGTCCCTTCTGGTCAAGAATTAGGGCCTCACGAGTCACG ATGAATGTCAATTTTTTTATCTCATGTCTTTCTTGATTCATGGTTTGGTATTCTGGTTCATAGGCATAGAGGAACCACACCAATCCATCCCAAACTTGGT GCTCTACTGCAGTGACAATATTGTACGGGATGCCTTGCAGAAATGTAGCTCATAGAAGGCAATTTTTTTTACATTGCAGGACCTTTGCAGGATGCAATTC AGAATCAAGGAAAATTTTAGTTCAAAGGCTGTATAACTTATGATTATTCCCTAGAAATTTTAGGGCTTCAATCAACCTCTGTAGATCAACCAGGAACTTA TTTACGTTATCATGGCAATGGATATTCAGTCCATGGTTATGAGAGGAATCTATTGAGTGGTATTCTAAATAGGATGGTTTAGTATATAAGGATATTAAAA AACCATAAAGGACTAAAAGAAAAGCATGTCACGTGTAGCCATGGTAGCTAAGTACGCTGTCCAGGGAAGGACGGATAAGGCACAAATCTGACATGGGGAT ACGACAAAAGAAATATAGAATGTTAAAGAATATGGTTAGGAGTTCAACCAAATCTGATGATTTATTTAATGTCAGGCTTAACTTGTGCTTAAGTTTATTT CACAAATGATTACATCATGATTTATGACAGATTTTATCTTTATTTTTGTGAGGAACATTTTAGATATCAAGTTTCTTGTCCTCATGGGAATACCGGTAAG TAGATAAATTTGTTTAAGGATGCCTATGATACAGTGACTAATTCTCAAACCAATCCTTCTTTTTTTCCCGCAGTGCCACAATGGACATACCCTTTGTTCA ACTTGTAAGACAAGGGTAAACAACCGGTGCCCAACTTGTAGACAGGAACTCGGTGATATAAGGTGTCTGGCATTGGAAAAGATAGCAGAATCACTCGAAC TACCTTGCAGATACAACTCTCTTGGGTGTCCAGAGATATTTCCCTATTACAGCAAACTCAAACATGAGTCTATTTGCAACTTCAGACCTTACAACTGCCC ATACGCCGGGTCGGATTGCTCAGTTGTTGGGGATATTCCATACCTTGTTACTCATTTAAGGGATGACCACAGAGTTGATATGCATTCTGGATGCACTTTT AATCATCGCTACGTCAAGTCTAATCCCATGGAAGTAGAAAATGCCACATGGATGCTAACTGTCTTCCACTGTTTCGGTCAGTACTTTTGTCTTCATTTTG AAGCCTTCCAGCTGGGTACTGCTCCGGTTTACATGGCGTTCCTCCGCTTCATGGGTGATGAAAGAGATGCGCGAAGCTATAGCTACAGCTTGGAGGTAGG AGGAAATGGGCGAAAACTAACTTATGAGGGCAGTCCAAGAAGCATAAGAGATAGCCATAAGAAAGTTAGAGACAGTCATGATGGCCTCATTGTATATCGG AACATGGCGCTTTTTTTCTCGGGCAGTGATAAGAAAGAGTTGAAGCTAAGAGTAACAGGAAGGATATGGAAAGAACAGCAAAACCCTGAAGGAGGTGTGT GCATACCAAACCTGTATAGCTAGGTTACTTGTTGTTGACAATTTTGGAAAGGAATTTATGCCTGGTGAATGATGATGTAGGTTTCAACTTACAAAATAAG AAGTTGCTCTAGCTTTTCTACAGTTTTAACAAAGATACTTGTCAAAATCTTTGGTCCTACATGTGCCATACTCTAAATTCCTTGAACTGTTTCTAAATAC ATTGAGCAGTTTTTCTCATGAAAGTGTTTAAATTTGGCATTGGCAATGGAAATTTTTGGTTTAAACTAAAAAAAAA
• Tissue: pods
• Gene name: LI_gene_180989;
• Additional information: details;

Expression of Ll_transcript_388972

FPKM

• PAB: 2.4
• PNAB: 1.7
• PS1: 1.8
• PS2: 2
• PS3: 2.4
• PW1: 2.7
• PW2: 2.8
• PW3: 2.1

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_388972

• Blastp: E3 ubiquitin-protein ligase SINAT5 from Arabidopsis with 85.03% of identity
• Blastx: E3 ubiquitin-protein ligase SINAT4 from Arabidopsis with 84.74% of identity
• Eggnog: -
• Kegg: Link to kegg annotations (AT5G53360)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019429063.1)
• Pfam: Seven in absentia protein family (PF03145.15)
• Rfam: 5S_rRNA (RF00001)
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;