| Id Trinity | TRINITY_DN50918_c2_g1_i6 |
|---|---|
| Name Transcript | Ll_transcript_388958 |
| Sequence | ATTATAGAAAAAATATTTAACCTCAAATAGTCAAATTTATGCTATTCATGGACCATTTATTTTCTTCCTTACAATTGATAATGATAAAAAATCTCCTTGT TTACTTTTGCTTCATATTTTTTTAATTTTTATATTCTGCATTCTATCTGAATCTTCCCACTTGCATTTTCTTCTTCTCTGTGTGTGTTTTTTTTGTGAAA TGCTGAGAGACATTGATTTTGATCAAAGGGTCATTAGTTGTCTGAGAACAAGGTGAGAAAACACAAAAAAAAAAAAAACGTTTTTTTTTATTTCTTTGGT TTCTGGTATCAACACAATAAAAACCCATCCTTTTTGCTCTTGTGTGTTGAAACTTACACAAAGGAATCATACCCAGATGAATATCAACTCACAACATTCC ATTCCACATCATTCTTATTTTTTCTGATGCATCTATCATTATTGGATTGTGTTTTGGTCTGTCTTATCCTTTGTTGTTCTTGATGTTGTCTTTTTAGCTG AAAAGGAAAGAAGGAATGGAATCAGGTAGCGTTGATAATAGTCTATCTTCATTGATCATGATGGATGAAGCTGAGAATCCACATCAGTTTTCTTCAATCA CTACCAAGCTTCATAGTAATGGACCCACTGCTACTAGTGTCCACGAGCTTCTTGAATGCCCCGTTTGCACCAATTCAATGTACCCTCCAATCCATCAGGT ATGTGCTTTTTTCAATTTTACTTCATGGGTTGGTTTCACCAATTTTGTTCTTAATTTATGTTGACCTGTTGGTACCTTGTTTCTTTGTTTTTTAAAGTAT GATGATTGCTTTTGAAGTGTGCAATTGAGTTTAGGAATTATGGGTTGTGTTTTGTTCCATGGATCTTATGTTTGCTGGCATTTTAGTTTGAATAATTTGG GCAAGTTTGAATATTATAGGGGAAATAAGGGTCTTGGACGTTTCGGGGTTCCTTCTCATCTTTTTTCATGTTTACATAAGGTAAAGATGTAGTTATGTAA TCATGGATGAATTGGATGGAGCGAAGTTTGAGTTGAGCTCTTTTTCTTGTAAATCTAGTCCTTTTCTATTGGCACTCTGCTATAAGAATGCTTTGTGCCA TTAGCTTCATTCAATTTTAGAGCCTCATTTTATTCAAGTTAACTCATGTTTAGATTGCTTTGCAAAGTAAGCAGTGTGTCGGTGTAAATGGTTGCTCCAT GGTGCTTCCAACAATTTTCATTTGTGCTTCTTTTGGTGGTTTTGGTATGAGTGTGAAAAATAAGATACAATATGGTTTTGTTCACCCAGGGTGTGGTGCT CTACTTGGATAACATCATTCTGTTGGATGAGACAACTTAAATGGACATAGTTATTACCCCATCTTCTTCATACCAGTGTGTGGTAGGGCAAAGGTATGGT GTGAGTAGTGACTCTGTAAACCCCTTCTCTATCTATCCAAGGGTCATGCGAAGGCCTTCAGTGTCCCTTCTGGTCAAGAATTAGGGCCTCACGAGTCACG ATGAATGTCAATTTTTTTATCTCATGTCTTTCTTGATTCATGGTTTGGTATTCTGGTTCATAGGCATAGAGGAACCACACCAATCCATCCCAAACTTGGT GCTCTACTGCAGTGACAATATTGTACGGGATGCCTTGCAGAAATGTAGCTCATAGAAGGCAATTTTTTTTACATTGCAGGACCTTTGCAGGATGCAATTC AGAATCAAGGAAAATTTTAGTTCAAAGGCTGTATAACTTATGATTATTCCCTAGAAATTTTAGGGCTTCAATCAACCTCTGTAGATCAACCAGGAACTTA TTTACGTTATCATGGCAATGGATATTCAGTCCATGGTTATGAGAGGAATCTATTGAGTGGTATTCTAAATAGGATGGTTTAGTATATAAGGATATTAAAA AACCATAAAGGACTAAAAGAAAAGCATGTCACGTGTAGCCATGGTAGCTAAGTACGCTGTCCAGGGAAGGACGGATAAGGCACAAATCTGACATGGGGAT ACGACAAAAGAAATATAGAATGTTAAAGAATATGGTTAGGAGTTCAACCAAATCTGATGATTTATTTAATGTCAGGCTTAACTTGTGCTTAAGTTTATTT CACAAATGATTACATCATGATTTATGACAGATTTTATCTTTATTTTTGTGAGGAACATTTTAGATATCAAGTTTCTTGTCCTCATGGGAATACCGGTAAG TAGATAAATTTGTTTAAGGATGCCTATGATACAGTGACTAATTCTCAAACCAATCCTTCTTTTTTTCCCGCAGTGCCACAATGGACATACCCTTTGTTCA ACTTGTAAGACAAGGGTAAACAACCGGTGCCCAACTTGTAGACAGGAACTCGGTGATATAAGGTGTCTGGCATTGGAAAAGATAGCAGAATCACTCGAAC TACCTTGCAGATACAACTCTCTTGGGTGTCCAGAGATATTTCCCTATTACAGCAAACTCAAACATGAGTCTATTTGCAACTTCAGACCTTACAACTGCCC ATACGCCGGGTCGGATTGCTCAGTTGTTGGGGATATTCCATACCTTGTTACTCATTTAAGGGATGACCACAGAGTTGATATGCATTCTGGATGCACTTTT AATCATCGCTACGTCAAGTCTAATCCCATGGAAGTAGAAAATGCCACATGGATGCTAACTGTAAGTATACTTGGGAGAAGGAGAGAGAATTGTCTGAGAC TAGAAACATATACAAACTATAGAAGTGTAATAACTGATATAAGAAAGCAACAAATGCCAAAGCTTCCTCTCCTTGGCGTCACAAAAAATAAAACCAACAT CTTGATATTACTTCATTGCGATCCATTTGCAGCAATGTTTTCTTGATTTCATGCACGAAAACAGCTATAATTTGCACATGTATTAGCATTTGGTGTGTGT GGACGGAGCAGGATGTGACATGATAGAGCTAGTGTTCTATTTGGTTTCAACCTCTTTAATTAGAACCAATGTCTTCCTTTTTGTACCCCTTGTTCTGATC CTTTTTCTTTCTCAAACATGGAAAAATCATTATGTTCTGTTTTGTTCTGTTATAACATGGCTACCAGATGCTAGTGTTGAATTGTCATCCAAATTGATAT TGCTAACTGCTTTATTGTTTCTGTTAGGTCTTCCACTGTTTCGGTCAGTACTTTTGTCTTCATTTTGAAGCCTTCCAGCTGGGTACTGCTCCGGTTTACA TGGCGTTCCTCCGCTTCATGGGTGATGAAAGAGATGCGCGAAGCTATAGCTACAGCTTGGAGGTAGGAGGAAATGGGCGAAAACTAACTTATGAGGGCAG TCCAAGAAGCATAAGAGATAGCCATAAGAAAGTTAGAGACAGTCATGATGGCCTCATTGTATATCGGAACATGGCGCTTTTTTTCTCGGGCAGTGATAAG AAAGAGTTGAAGCTAAGAGTAACAGGAAGGATATGGAAAGAACAGCAAAACCCTGAAGGAGGTGTGTGCATACCAAACCTGTATAGCTAGGTTACTTGTT GTTGACAATTTTGGAAAGGAATTTATGCCTGGTGAATGATGATGTAGGTTTCAACTTACAAAATAAGAAGTTGCTCTAGCTTTTCTACAGTTTTAACAAA GATACTTGTCAAAATCTTTGGTCCTACATGTGCCATACTCTAAATTCCTTGAACTGTTTCTAAATACATTGAGCAGTTTTTCTCATGAAAGTGTTTAAAT TTGGCATTGGCAATGGAAATTTTTGGTTTAAACTAAAAAAAAA BLAST |
| Tissue | pods |
| Gene name | LI_gene_180989; |
| Additional information | - |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_388958
| Blastp | - |
|---|---|
| Blastx | E3 ubiquitin-protein ligase SINAT3 from Arabidopsis with 88.46% of identity |
| Eggnog | e3 ubiquitin-protein ligase(ENOG410XVP0) |
| Kegg | Link to kegg annotations (AT3G61790) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019456873.1) |
| Pfam | - |
| Rfam | 5S_rRNA (RF00001) |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |