| Id Trinity | TRINITY_DN50918_c2_g1_i7 |
|---|---|
| Name Transcript | Ll_transcript_388959 |
| Sequence | ATGAAATCATGATAACCGTTTGATTTTAATCAAAGGGTCTCTGTGATTGAGAAACACAAAGACAATAATAGATCATAGATTCTATCACCCTCTGTCTTAG AAGTCCAAGGTAGAAAGAAAAGCATCAATTTTTATTTTTGGGCTTCACTTTCTTCAACCAATCAAATTAAAAATCATTGCTTTTTCTACTTCCCTTCTTT CTTCTCTTCAAAATTACACATAACAGTTCTACCCATCAATTTTTTTCTTAAGATTTATGTGAATTATACCCATTATTGAAGAATAGCTATAAATTATTGA TATTGGTGTTATTATCTTTGTTGATTTATCTGAGAAAAATGGAATCAAGTAGCATTGATAGCAATATATTGTCTTTGAGTATGTTGGAAGAAGATGAGCA TAGTCATCATCAATTTTCTTCAATCTCAAAGTTACATAGCAATGTTCCAACTACTACAAGTGTTCATGACCTTCTTGAGTGTCCTGTTTGTACAAATTCA ATGTACCCTCCAATCCATCAGTGCCACAATGGACATACCCTTTGTTCGACATGTAAGACAAGGGTACACAACAGGTGCCCAACTTGTAGACAAGAACTTG GTGATATAAGGTGTCTGGCATTGGAGAAGATAGCAGAATCACTTGAACTTCCTTGCCGATACATCTCTCTCGGGTGCCCGGAGATATTTCCCTATTACAG CAAACTCAAACATGAGGGTATTTGTAACTTCAGACCCTATAACTGTCCTTATGCTGGTTCAGACTGTTCTGCCGTTGGAGATATTCCATACCTTGTTGCT CATTTAAGGGACGACCATCGGGTTGATATGCATTCTGGATGCACTTTCAATCATCGCTATGTCAAGTCTAATCCCATGGAAGTAGAAAATGCTACGTGGA TGCTCACGGTAAGCGTAACCCTACCACCTCACCACCACCACCCTAACACTTTTGATGGTTGTTCTACCCATACCGAGTACATACCTGGTACCGGTACTTA ATTGGTAACATGGGTATTTACTGAATGCACAGATGATAAGTAGAATGGTAGATACATGATATAACTCAAATACAAGTCATCAATGCATTCAAAGCATCAA GTTTTGTTGCTAAGTTAAAATTTTCCTATTAAATGAAACAAAGTACTATTTATTTTATGATAATTAAACAAACTACAATTTCACTTCCTTTAAATCACAT TCCTTCTTTAAATATTTTGGCTTACTTGAAATACTTTATGGAATTTTGTTGAAACGTTGAAGTTATATTATGATTTAATCACTATTGTTTATATTTCTAT ATTCTCTATACAATATATCATGTCTTACTCACACCCTAGTCTTCATAAAATTTGCCATGCGCCGTACCAGTACCCGTATTGGTACTACTGGTGAAGTACC AGTATCAATGCTACTTAGGGTGCTGTGCATGGAATAATCTTGATAAGATATTCACTGCTATGCATTTGAAGCAGATATTTCTTTATTTCATGCATATATA CAACTACGTTTTACACATTGAAATCTCATCCAAATTGAAATGGTTGAATCATGTTATAGGTCTTCCACTGTTTTGGTCAGTATTTTTGTCT BLAST |
| Tissue | pods |
| Gene name | LI_gene_180989; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_388959
| Blastp | E3 ubiquitin-protein ligase SINAT3 from Arabidopsis with 72.82% of identity |
|---|---|
| Blastx | E3 ubiquitin-protein ligase SINAT3 from Arabidopsis with 77.78% of identity |
| Eggnog | e3 ubiquitin-protein ligase(ENOG410XVP0) |
| Kegg | Link to kegg annotations (AT3G61790) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019424223.1) |
| Pfam | Seven in absentia protein family (PF03145.15) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |