Ll_transcript_389080

• Id Trinity: TRINITY_DN50939_c0_g1_i12
• Name Transcript: Ll_transcript_389080
• Sequence: CAGCATTGAAGCTGACAACGTTGAAGCTGACAACGTTGAAGTTAGAAGGAACATCCTCTTCACTCTTTGTCTCCAAAAAACCCACTCACATATTCAGATA TTGAGAAAGAGAGAGATGAGAAAAAACATAAGAAAATTGGGTGTAAAGGATTTTGTTAATGCAGGATTAACTGTGGAAGAAGCCAATGAATTTGATGGTG TTTTGAGTAATATCATCTCTATCTCATCTTCTCCTACAGATACATGGCACCATTTGGTTACTAACAGATTGCTCAAACCATCTTACCCTCATTCTTTCCA TCAACTTCTTTATTACTCTATCTATCAATCTTTTCAATCACATGCTACTGCTGCTCATAATAATTTTGCTGACCCTCCTTTTTATTGGTTCCCTTCTATA GAGCAGGCTAAACGCACCAACTTGGGGCGTTTAATGGAAACCAATGGTCCTAAGCTTTTAGGAGATTCCTACAAAGATCCCATTACCAGTTTCCCTCTCT TTCACAAGTTTTCTATTCAGTGCCTTCAGGTGTACTGGTCTCTTATTCTCAAGGAACTTTCAGTTTCATTTGTGGAACCTCCGAAGTGTATATTAGATAC TTCTGACCCTTCCAAGCATGGAGGAACTTGGCTCCCTGGTTCTGTTTTGAATATTGCAGATTGCTGCTTGCAACCAAGTGCACACCCCAACAAAAAAGAT GACAGTATAGCCATCATCTGGAGAGATGAAGGCTTTGATGATGCCAAGGTTAATCGTATCTCACTCAAGCAACTTCGCCAGCAAGTAATGCTTGTAGCAA GTGCGATAGATGCCACATTCTCAAGGGGAGATGCAATTGCAATTGACATGCAAATGACAGCCAATGCTGTTATTATATATCTAGCCATTGTTCTAGCCGG ATGCGTTGTGGTATCCATAGCTGATAGCTTTGCACCAAAAGAAATCGAAGCTCGCCTGCGTATTTCCAAAGCAAAGGGTATTTTCACACAGGACTTCATA TCAAGAGGTGGCAGGAAATTCCCTTTGTACAGCCGAGTCATCGAGGCAGCTTCATGTAAAGTTATCGTGCTCCCGGTGATCGGTGATGATCTAGGAGTGC GATTAAGAGAACAAGATTTGTCATGGAAGGATTTTCTCTTTTCTGTCAGATCAGATCATTACGCGCCAATTTATCAACCGGTTGATTCTGTAACTAACAT ACTATTCTCTTCTGGAACCACTGGTGATCCAAAAGCAATTCCGTGGACTCAACTTGCACCAATCCGAAGTGCTGCTGATGGATGGGCTCTCATTGATATT CAACCTGGAGATGTTTATTGCTGGCCTACAAATTTAGGATGGGTGATGGGACCAACTCTAATATATCATTGCCTTCTAACTGGTGCAACTCTTGCTCTGT ACCATGGATCTCCTCAAGGCCATGGTTTCGGAAAATTTGTTCAGGATGCTGGTGTTACCATTTTGGGAACCGTTCCGAGCTTAGTGAAAACTTGGAAGAG TACACAATGTATGGAGGGCTTGGATTGGACAAAGATAAAATTATTTTGTTCCACTGGAGAAACTTCAAGCGTCGACGATGACCTGTGGCTTTCTTCAAAA GCTTATTACAAACCAATCATTGAATTGTGTGGAGGTACTGAACTTGCTTCTAGTTACATTGCGGGAAGCCCGCTGCAGCCTCAAGCTTTTGGAGCATTTA GCACTACATCAATGACAACTGGCATTGTCATTCTTGATGAAAATGGAGTTCCTTATCCAGAGGATGTTTCTTGTGTTGGTGAAGTGGGCTTGTTCCCTCT GTCTCTGGGAGCATCTGATAGATTGCTTAATGCTGATCATGATAAGGTTTACTTTAAGGGAATGCCCATTTTTGAAGGAAAGGTATGCCGTATATCTAGT TCGATAAATATACTTAGCGTGATGTAATGAGTATTTCCACATTTAGATACAGCTATCCTGAAATATTAGTTCTTTCATACATATTCTCTTCCAATATAAA GAGAAAGTATTTTGTGGTTTCCAATGGTTCATTACATCATATATGTAAAATAAGGGCGGCTAGTTATGTAAGCATCTTTACCCAGCAAGCGGAAAAGTTG TTTTCAAGGTTATAAAGACTAAAATTGTAATTTTTATTAATCCCCTTCTTTTATTATCGTAGCTTACTACATTTTTTTATAACTTTTCATGTCTATTTTG ATAAATGTATTAAAAGGTTCTTAGGAGACATGGAGATATAATCAAGAGAACTATTGGAGGCTACATCATTGTGCAAGGGAGGGCTGATGACACCATGAAT CTTGGGGGAATTAAGACAAGTTCCATAGAAATTGAGCGTGTCTGCGATAGAGCCTATGAATGCATTCTCGAAACAGCTGCAGTCAGTGTTGCACCTGCAA ATGGAGGCCCTGAGCAACTTGCTATATTTGTAGTTCTAAAGAAAGGATTCAATTCTAATGCAGAAACTCTAAAAAATATATTCTCTAAAGCCATTCAAAC CAACCTTAATCCTTTGTTTAAGGTAAGCTTTGTTAAAATTGTTCCGGAGTTTCCTCGAACAGCTTCCAACAAAATATTGAGACGAGTCTTGAGGGATCAA TTGAAGCATGGAGTATCAGTTCAGAGCAAACTTTAATGACATCATTGATTCACTACAGATGAATTCATGCAATCAGGCCTTTTCATATGGATGAATCAGT GAAGGATTATTTAAGTAGCAATGAACATTATAATCACTCATTGTAAGCAAGGAGATTTTCATATGATATAGCATATAAGTAAATATGTTTTTGCGGAGTT AAGTCCTTAATATGGGTGAGCCTTGACACAGCCGTAAGGGTGTTGCTTAGTAATCACAAGATTTTTTTTTTTTAATTGTTGATGTGTATTCAAAACTTTA AAAATCAATGTGACAAGGTTTTCTTGGATCAAAA
• Tissue: pods
• Gene name: LI_gene_181177;
• Additional information: details;

Expression of Ll_transcript_389080

FPKM

• PAB: 0
• PNAB: 0.9
• PS1: 0
• PS2: 0
• PS3: 0
• PW1: 0
• PW2: 0
• PW3: 0.2

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_389080

• Blastp: Probable acyl-activating enzyme 18, peroxisomal from Arabidopsis with 66.44% of identity
• Blastx: Probable acyl-activating enzyme 18, peroxisomal from Arabidopsis with 66.44% of identity
• Eggnog: Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA (By similarity)(COG0365)
• Kegg: Link to kegg annotations (AT1G55320)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019460987.1)
• Pfam: AMP-binding enzyme (PF00501.27)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;