Ll_transcript_389071

• Id Trinity: TRINITY_DN50939_c0_g1_i5
• Name Transcript: Ll_transcript_389071
• Sequence: GTCCCATGTGAGCCACTACCTACAACACTTTTGTCAATAAATTTCCTTGATTGCCAAAAGCATAACAGCACTGAAGAAGAAATGGGAAAAAAGAGCATAA GGGAATTGGGTGCAGAGGATTTTGTGAATGCAGGGTTAACTGTGGAAGAGGCCAATGAATTTGATGGAGTTTTGAGTAATATAATCTCTATCTCATCTTC TCCTACAGATACATGGCACCATTTGGTTACTAACAGATTGCTCAAACCATCTTACCCTCATTCCTTCCATCAACTTCTTTATTACTCTATCCTTCAATCT TCTCAATCACATGCTGCTGATAATGATTTTGCTGACCCTCCTCTTTATTGGTTCCCTTCTTTAGAGCAGGCCAAATGCACAAACCTTGGTCATTTCATGG AAAGATATGGTCCCAAGCTTTTAGGAGATTCCTACAAAGACCCCATTACTAGTTTCTCTCTATTTCACAAGTTTTCTGTTCAACACCCTCAGGTGTACTT GTCTCTTGTTCTCAAGGAACTTTCAGTTTCATTTGTTGAACCTCCCAAGTGTTTTTTAGATACTTCTGATCCATCTAAGCATGGAGGAACTTGGCTTCCG GGTTCTGTGTTGAATATTGCAGATTGCTGTTTGCAACCAAGTGAACACCCCAACAAAGGAGATGATAGTATAGCCATCATTTGGAGAGATGAAGGATTTG ATGATTCTGATGTGAATCGTATCACTCTCAAACAACTTCGACAACAAGTGATGTTGGTAGCGAATGCAATAGATGCCACATTCTCGAAGGGAGATGCAAT CGCAATAGACATGCAAATGACAGCCAATGCAGTTATTATATATTTAGCCATTGTTTTAGCAGGATGCATTGTTGTATCCATAGCTGAAAGCTTTGCACCA AATGAAATTGAAGCTCGCTTACGTATTTCTAAGGCAAAGGGTATTTTCACACAGGATTTCATATCAAGAGGTGGCAGGAACTTCCCTCTGTACAGTCGAG TCATTCAAGCAGCTACATGTAAAGTTATCGTGCTCCCCGTGATAGGTGATGATGTTGGAGTGAAATTAAGAGATCAAGACTTATCATGGAAGAGTTTTCT CTCCTCTAGAAGACAGAATGGCAGATCAGATCATTACACTCCAATCCATCAACCAATCGATTCTGTCACTAACATACTTTTCTCATCCGGAACCACAGGA GAGCCAAAAGCTATTCCTTGGACTCAACTTTCACCCATAAGAACTGCTGCTGATGGATGGGCTTTCATGGATTTTCAATCTGGAGATGTCTATTGCTGGC CAACAAGTTTAGGATGGGCGGTGGGACCAACGATAGTATATTCATGCTTCCTATCTGGTGCAACTCTTGCTCTCTACCATGGATCTCCTCTAGGCCATGG CTTTGGAAAATTTGTTCAGGATGCAGGTGTTACCATTTTGGGAACAGTTCCAAGCTTAGTAAAAACTTGGAAGAGTACTCATTGCATGGAGGGCTTAGAT TGGACAAAGATAAAAACATTTTGCTCCACTGGAGAAACCTCAAATGTTGACGATGACCTTTGGCTTTCTTCAAAATCTTATTACAAACCAATCATAGAAT GTTGTGGAGGCACTGAGCTTGCATCTTGTTTCATCATGGGAAGCCTATTGCAGCCTCAAGCGTTTGGAGCATTTAGCACAGCATCAATGACAACTGGCTT TGTCATCCTTGATGATAATGGAGTTCCTTATCCAGAGGATGCTCCTTGTGTTGGTGAATTGGCCTTATTCCCTCTATATATGGGAGCTAGTGATAGATTG CTTAATGCAGATCATGATGAGGTTTACTTCAAGGGAATGCCCATTTACAAAGAAAAGGTTCTTAGGAGACATGGAGATATAATCAAGAAAACTGCTGGAG GCTATTTTGTTGTACAAGGGAGGGTTGATGACACCATGAATCTTGGTGGAATTAAGACAAGTTCGGTAGAAATTGAGCGTGTTTGTGATAGGGGTGATGA AAGCATTTTGGAGACAGCTGCTATCAGTGTTGCACCTGCAAATGGAGGACCGGAACAACTGGTTATATTTGTAGTTTTAAAGGAAGGATACAATTCGAAT GCAGAAGCTCTAAAGAAGAAATTCTCTAAAGCCATTCAAACCAACCTTAATCCTTTGTTTAAGGTAAGCCTTGTTAAAATTGTGTCTGACTTTCCTAGAA CAGCTTCAAATAAATTGCTTAGAAGAGTTTTGAGGGATCAAATGAAGCATGAGCTCTCGGTTCAGAGCAGACTTTAGAGACCTTATTGGTTATTGATTCT CAACAGACCAAGGCATGCACCAGGATTCAGACCATTATGTGGAAACATGCAAATTTTCCCAATATATCTTAGAATATGATTATTATTGAAGGATGAAGTT TTTGGTATTTAAGGAAATTTTATGTCATGAAAACTCGCGTGTTCCTAGTGAAATGCATTAAAACAACTTTGGTATGATAAGTTGTCATATCCTAGTCCTA CTTGTCATGCATTGGTTGCCTAAGTGCAATATGATATTATAGTAGAATTTATTAATGATAAGTTTAAGAGAAACATTATTCTAAAAACTTAAGTAAAATA AATGTCAGACAAACTTTGTTTTATTCCTTTTCATTTTTTCTCAATATGTTCAATATTTCAATGAAGTGTTCTACTTTTGGTAGCACTATTTGGTAGGTTT TGGATGTTGTAGTAACTTCTCTCTGAG
• Tissue: pods
• Gene name: LI_gene_181177;
• Additional information: details;

Expression of Ll_transcript_389071

FPKM

• PAB: 0.8
• PNAB: 1.9
• PS1: 1
• PS2: 3.5
• PS3: 4.5
• PW1: 1.3
• PW2: 2.6
• PW3: 1.6

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_389071

• Blastp: Probable acyl-activating enzyme 18, peroxisomal from Arabidopsis with 67.39% of identity
• Blastx: Probable acyl-activating enzyme 18, peroxisomal from Arabidopsis with 67.39% of identity
• Eggnog: Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA (By similarity)(COG0365)
• Kegg: Link to kegg annotations (AT1G55320)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019462587.1)
• Pfam: AMP-binding enzyme (PF00501.27)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;