| Id Trinity | TRINITY_DN50952_c1_g1_i7 |
|---|---|
| Name Transcript | Ll_transcript_388177 |
| Sequence | TTTCCAATCAAACTAAAAACCTTATTTATTTTATAAATTTGTATTTACATTTGAAGTCGAGTAAATGACAAGCCCAATCCAATCAATCATTTGGGAATTG AGAAGAGAAAGAAAAAGGGAAGAGAGAAAGAGAGAAGAAAAAAGAAACTACACAAAAACGGAGAAGTTGAGTGTAACAGTGAACATCGATGGATGAGAGA GTAATAGAAACCGAAACCGAACTATTTATGTTTGGCTTCGACGGTGTTTTATTCCGGTGATCGGAAATGTTGATTTTCCGGCAACTGTTGTCGGTGGGAG TTGACTGAAGAATAATCAATACAGTGATGAAGAAAGGGAAAAGTAAAAACAACGGTTTATTGCCAAGTTCGTTGAGGATTATCTCTTCATGCATCAAAAC CGTTTCCACCAATGTCTCCACCGTCGCCTCCTCCGTTCGCTCCTCCGCCGCTTCCATTACCTCTGCTCCCGATGATCACAAAGACCAGGTTACCTGGGCT GCTTTCGATATACTAGAGCTTCATCAGTCTAACTTTAAACGTATTCTTTTACTTGGTTATCTCAACGGATTTCAAGTTCTTGATGTCCACGATGCTTCTA GCTTTATTGAGCTGGTTTCGAAGCGTGATGGTCCGGTTTATTTCTTACAGATGCAGCCTTTTCCTGTATGCTCTGATGGCCAGGAAGGGTTCATAAAATC CCATCCTTTACTGCTGGTTGTTGCCGGGGATGATACCGGCATTATTAATCACAAAGGTACCCATTCCAGTGCTTTAGGAAGGGGTGGTAAGGTGGAAAAT CAGTCTGGGAACAGTGTCAACTCTGCTACAGCTGTTCGGTTTTACTCATTGAAGTCTCACAGTTATGTTCATGTTCTGAGATTTCGGTCTGCGGTGTGTA TGATCAGATGCAGTTCACAGATTGTAGCTGTTGCTCTTGCCACACAAATATACTGCTTTGATGCGTTAACTCTTGAGAATAAATTCAGTGTTCTCACCAA CCCTGTTCCTCAGTTAGCAGTCCAAGGATCATTAGGTGTTAATGTGGGTTATGGTCCTATGGCTGTGGGTCCAAGGTGGCTAGCATATGCTTCCAACAAT CCACTGCCCTCAAACGTAGGATGCATGAGCCCACAAAACCTAAGTCCTTCGCCAGGAGTTAGTCCATCTACATCTCCAGGCAGTGGTAGTTTGGTGGCTC GTTATGCAATGGAGTCCAGTAAAAGTTTGGCTGCTGGGATAATCAAATACTGTCATGAGCTACTCCCTGATGGTTCTAATTCTCCAGTACCATCAAATTT GGGTTGGAAAGTTGGGAGGGTTACAGGAGCTGATAAGGATAATGCAGGAATGGTTGGTATTGTTTCACCATGCTCAGCTAATTGAGAAGTTAGAAATATG TACACACTTTAGGTGAGAGAGAGAATATTAATCTCTGACGTATTCTTAGTTCATATGATTTATTGCAGGTAGTTGTTAAGGATTTTGTTTCCAAAGCAAT CATCTCACAATTTAAAGCTCATTCTGGTCCTATATCCGCCCTATGTTTTGACCCTAGTGGGACCCTTCTGGTCACTGCATCAGTCTATGGGAATAACATT AACATCTTTCGGATAATGCCATCATGCACACGCAAGGGTTCAGGGGTTCCAGGCTATGACTGGACCTCTTCTCATGTGCATCTTTATAGGCTTCATCGTG GAATAACACCCGCAATGATCCAGGACATTTGTTTCAGTCAGTTCAGTCAATGGATTGCAATTGTTTCATCCAAGGGGACTTGTCATCTTTTTGTTTTGTC ACCTTTTGGAGGTGATACTGGTTTCAAAATCATTAATTCTCAGGGTGAAGAACCCTCCTTACTTCCGGTTTTTCCTCTACCTTGGTGGTTTATGTCATCT TCCACTTCTTATGAGCATCCTTCGCCTCCTCCAGCACCTAGTGTCCTTTCTGTGGTTAGTCGGATAAAATATAGCAGTTTTGGATGGCTTAATACTGTTC ATAGTTCTACTTCGAATGTCACAGGAAAAGTTTTTGTTCCTTCTGGTGCTATTGCAGCTGTTTTTCATAATTCTTTATCTCACTCAAAGCAGCTTGGTAA CTCAAAAGTGAAACCATTAGAGCATCTGATGGTATATACACCGTCAGGTCATGTAGTTCAACATCAACTTCTGCCATCTGTTGGTCCAGAACCAAGTGAA TGTGGTTTGAGAACCCAGTCAGCTTCAAACCTGCATATGCAAGAGGATGAATTCAGAGTAAAAGTTGAACCAATTCAGTGGTGGGATGTATGCAGAAGGT CAGAATGGCCAGAAAAATGGGATCCTTGTGGCAATACTGTTGATAGACAAGATGGTATTGTTCAAGAGAAAATGTGTTCTGCTGATGGCTATGGATTGGA TTTTTGGGATATAAGTCGTGGTGTTGGGGAAAAAGTGGTAAAGCATTCTACAGGGAAGCCTCAAGATAGATTTCATGGGTATCTATCTAATGCAGAGGTG CAAGTGAATTTTGGAAGGCTGCAAATATGGCAAAAGCCTAAGATTTACTTCTATGCAATGAATTCTGTGAGAACTGGTTTTAGTGATGGTGGAGAGTTTG AAATCGAAAAGATCTCTGCTAATAAAGTTGAAATAAGACAGAAGGAGTTGTTGCCTGTCTTTGACCATTTTCATAGCATCAGACCAAGCTGGAATGACAG GTAGTGTCTGTTTTTCTTTTTTACCCCTGGCGGATTTGGTTATCTATCTAGCACGTCATTACTTTGTCAATCCATGTTATGCTTTCTGATGAAGACTACT TTTAGATTATTAATATTTATTGTGACAATGGTATATGATAAAAAGAAAATGGGATTCACCAAATATTAAAGAAACAACACAATGGTTTTTTTATCATTAG ACACTTTGGACTTTCCCAAATTTGTGTCTTAAGGGAGTATTGACTTCATTTGGCTGGTTACCTTGCGGGCACTTGCTATTGTTTGATGTTGAATGTGTAT CTTATTTTAATGGGATTGCAATTTATATGTTTACAATTGCAAACTTGATATTGCATCATCCCCAACTGACTTACTGTATCATGTTGTAGATGAACTGGTT TCATGTATTGTCTCACCTAAAATCATGCCTGCTAGCTGCACCTCAATCACCCCTTTTGGGAAAACAAAGAAAAAATAAACATCATTATTATCAATTTTTT CACCTGGTCTAGATTACACGTGGTCATCCATCTTTTAAGCACCTTCTGTATGCATTCAGTGTATGTGTAATTGTGTATGAACTAGGTAGATATCATGCCT AGCAAATTGCATGTATTATCATCAGTGAAATGACATCTATGTTGTTTTTTGGTTTGTCTGTGATTCTCTATAGTCTTTTATTTCATCACATGCTTACTTG GTTGTTTGACTTAAGAGACCATGCTGGGGAAAAATATTTGAACCTTGCATCTCCGGTTTCCTATCAAGCTGAAGGCAGGCAAACTGCTGACATGACAGTT ATTTGTCACTCAAAGCCAGCATCCCTGAGTTCCACTGAAAGCTCTGATGGAGGTAAGAGAGTAACTTTTAACTTCCGTGGAGCAAACATAACAACAATTA TTGAAGACCCATCAGAATTTATACAAGAGTGTGGATGTATTTGTGAAAATGCAATTTACATTTATTTGAATCTCCATGTGATGGCCTACCCTTAGATTTG ATGTCTGTAATTAACTTTAGGTTCATCAAGAAGGATCGAAAATTTGATTGACCTGGATCAAATTTCTCCTACTTGTCAAGTATTTGGTGAGATCTACCTA GAAAGAATGGGGGCAATCAATGTTGAACCTTCGCTGCAAAACAAGGCTGTGCTGGAAAATTTATCTCTATCTGGGAACCTGAAACATGAGGATTCTCAAT ATGACTATTGTCTTGATAACAGACCATTATTGCAAGGGAGCAAGATAACTTATTTAAAGGGAGATACTTCAGAAGATGTTGGTATCAGTGAGGCCTCAAC ATTTGTCCTGAAACATGCTTCAGATAAGAGTGAGCCTATAGAAGTGATCCCAGTAATGCAAAATGCATGTGATAGTCAATCATTTCCGGATAGGCAGTGC AAAACACCGAGGCACAAGGGAGGTAACGTGTTAACTGAAGTAGTAGCTGATGATGTTGACAGCAGCAGTAGCCACCATGAAATAGAGCAACCAGAGGAGG ACGGGGAGAATGATGAATTCCTTGGTGGCTTGTTCGCCTTTTCTGAATAAGGAGTAAAGAGCAGGTGACAGCATCAATGAAGGTGTGTGATCATCTTTGG TAGCTGGAGTCTCAGTTAGGAATATGTACAAAGCAATATGTGAATAAGAAATGATAAAAGAGCAACATATTAGGCTGATTTGTTGCTATATCATGTGACC TCTCTCTCTCTCTCACTTTTGTACATTTTGTAAATAGGAAATCATATTCTATTCACGGGTTTGCTTACATTGGGGCTTATCATCTATATGTTGGGTTTGG ATTCCTCCTAAGCTCATTTTTTTAATCAATCTTGCATCTTAATTGTGGATTGGGTATGGCATGGTATTTGTGTAATGCATATTTTTTAACACTTGAATTT GGCAAGGAAAATATGAATGGAAGTTGTAAAAGGTCAGTTAAATTTTCATCATGTTTTACTT BLAST |
| Tissue | pods |
| Gene name | LI_gene_181253; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_388177
| Blastp | Autophagy-related protein 18g from Arabidopsis with 54.52% of identity |
|---|---|
| Blastx | Autophagy-related protein 18g from Arabidopsis with 55% of identity |
| Eggnog | Breast carcinoma amplified sequence(ENOG410XSW7) |
| Kegg | Link to kegg annotations (AT1G03380) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019441802.1) |
| Pfam | Breast carcinoma amplified sequence 3 (PF12490.7) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |