Ll_transcript_388850

• Id Trinity: TRINITY_DN50958_c0_g1_i12
• Name Transcript: Ll_transcript_388850
• Sequence: AATATTCCTTTTTCCATAATATTCTTTAAATAATTGAATTAAAAAAAAAACAGCGCATTTTCTAAATTCCAATCTCTTCTTCTCAATTTTATTACTCATC TTTCTCTTTCCTCATCAACTTCCAACTTCATGAACAATCACTTATAGCAACCTCTTATACTATTTTTATTTCCACTCGCGATGGGTAACGGCGTCGGAAA GTTAACACCGTGTTTCACCGGAAACGGTGGTCGTCGAAACCGTAATGAAATTTCCGTTTGTATAACGGAGCCACTAGACGAGGGTCTCGGTCACTCTTTC TGCTACGTTCGACCCGACCCGACCCGTTTATCATCTTCCAAGGTCCACTCAGAAGAAACGACGACGTTCAGAACAATCTCTGGTGCATCGGTGAGTGCCA ACACATCAACGCCGCTCTCAACGGCTTTCGTAGATTTATACTCACACGGTTCAATTGACCGAGCCGCGGCATTCGAATCTTCAACCTCCTTCGCTTCTCT TCCACTTCAACCTATACCTAAACTTTTATTGAATTCGGGTCCTTTCTCCGGTAACCTAACCGGTTTTCACGGTTCGGGTCCTCTCGAGAGAGGGTTCTTA TCGGGTCCGATCGAGCGCGGGTTTATGTCCGGTCCGATTGAAAAGGATGTTAATAGTTTAGATCAGTTTCAGAGAAGCTTCTCTCATGGTGGATTAGGTT TCGGATCCGGATTCGGGTTAAATATTGGAAAACAAAAGGGTGGGTGGATTCGGGTTCTTCAGAGAGCGATTTCGAAGACTCTGTCTCGTGGGCAGAACTC AATTGTGGCACCGATCAAAGGGGTTATGACAGTGAAGGAACAACAAGAGTGGGTTATTGCTGCAGCGGAGAAGAATCATAATGAGAATTCGACAGTGAAT AGTTTGGTTTTCAGTAATGAGGGTAGTTTGGAAGAAGATGATTCGAAGGAAAGTCAGAATCTTCAATGGGCTCAGGGGAAAGCAGGGGAGGATCGTGTCC ATGTTGTGGTTTCCGAGGAACACGGTTGGGTTTTCGTAGGGATTTACGACGGTTTCAATGGTCCTGATGCACCTGATTACCTTCTCTCTAATTTGTACAC CTTTGTTTACAAAGAATTGAAGGGGTTGCTGTGGGATGATAGTTCTGAACAAGTTGCTGTAAATGAGAATCAGAATTTGAAAGTGCAAGATGGTGATGAT TGTTCTCAGTGTTGTGGTAATAACAATGGTCCTTGCACGAGTGATGATGCTGCGGAATATGATGATGTTTGCAAGAGAAAGAAGGTTAAGAGTTGCAAGG GTAACTACAAAGGTGCTGCCAAGAAATGGGAGGAGAATCAGAGAAGGTGGAAGTGTGAATGGGATAGGGAAAGGTTAGAGCTTGATAGAAGATTGAAGGA GCAGTTAACTCGATCTAGTTCCGGTGAGAAGAATACTAGCTCGGTTAACCATTTAGATGTGTTGGAAGCTCTTTCTAGGGCTTTGAAGAAAACTGAGGAG TCTTATTTGGATGTTGCTGATAAGATGGTGATGGAGAATCCCGAGTTGGCATTGATGGGTTCGTGTGCGCTTGTGATGTTAATGAAGGGGGAAGATGTTT ATGTGATGAATGTTGGTGATAGTAGAGCTGTGTTGGCGCAAAAGGTGGAGCCTGATTATTGGCTTGGGAAGCTTAGGCAGGACTTGGAGCAGATCAATGA AGAGACCATGAACGATCTTGAATCCTTGGATGATGCTGATAGATCAAACTTGGTTTCTACTCTAAGTGCTCTTCAACTTACCAAGGATCACAGTACTAGT GTTGAAGAAGAAGTCCAGAGAATAAAAAAGGAACACCCGGATGATCCTTGTGCAGTTGTAAATGATCGTGTTAAGGGTTCTCTGAAGGTTACCCGAGCTT TTGGTGCTGGATTTCTCAAACAGCCCAAGTGGAACAATGCACTTCTAGAGATGTTTAGAATAGACTACGTTGGAACTTCTCCTTACATCAGCTGCGAACC ATATCTAAAACACCACAGATTAGGCCCTAAGGACAAATTTTTGATTCTATGCTCTGATGGGCTCTATCAATACATGTCAAACGAACAAGCAGTTGCGGAA GTTGAACTTTTCATCACGTTGCAACCTGAGGGAGACCCCGCTCAGCATTTGGTTGAAGAAGTGTTATTTCGTGCGGCAAACAAAGCAGGTTTGGACTTCC ACGAGTTGCTTGAAATTCCACAAGGTGATAGACGGCGTTACCATGATGATGTTTCCATCATTGTTATTTCTTTGGAAGGAATGATATGGAGATCATGTGT ATAAGTACAGTGAAAAGCATATATGATATAAGAAAGGAAGGAGATGAGGAATATAGTACTCTCAGGCATGACCTTTTTGCTGTTTTCTCCTCTTCATGCT CACCATTTGTAAAGTAGCAGCTAAACACTGTAAGAGTGTCTTAGTTGAGCAGTTCAGTGAGTGATGAGGATTGTAAAGTTGTAAAAGCTGGATTTTGTTG ATTATAACTCTGGTATAAAATTGTTATTTTAGTAATAAAAACATTCCTTAAAATATTTTCTTTGTGCAAAAA
• Tissue: pods
• Gene name: LI_gene_181304;
• Additional information: details;

Expression of Ll_transcript_388850

FPKM

• PAB: 1.8
• PNAB: 0.4
• PS1: 1.8
• PS2: 0.7
• PS3: 1.1
• PW1: 0.2
• PW2: 1.3
• PW3: 1.3

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_388850

• Blastp: Probable protein phosphatase 2C 4 from Arabidopsis with 66.21% of identity
• Blastx: Probable protein phosphatase 2C 23 from Arabidopsis with 64.62% of identity
• Eggnog: Phosphatase(COG0631)
• Kegg: Link to kegg annotations (AT1G07630)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019413967.1)
• Pfam: Protein phosphatase 2C (PF00481.20)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;