Id Trinity | TRINITY_DN50958_c0_g1_i4 |
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Name Transcript | Ll_transcript_388842 |
Sequence | CCAAAAAACACTTTACCTTAAAGTCAACGCTTCTCTCTCTCTCTCTCTCTTCATCTTCTTCTTCTCAACTTCAATCATTCAATGATTCAACTTTGATTCT TCACCCTCTCCCACTTCATGAACAACCACTTATAGCAACTTCCTAACTCATCTCTTTATTCTTTTTATTTTATTCTCAATTTTCACCTGACATGGGTAAC GGCGTTGGAAAACTAACCGTCTGTTTCACCGGTAACGGTGGTCGCCGGAAACAACATGAAATGTCGTTTTGCATAACGGAGCCACTAGACGAGGGTCTGG GTCACTCTTTCTGTTACGTTCGACCCGACCCGACCCGTTTATCATCTTCTAAGGTTCATTCTGAAGAAACGACGACGTTTAGAACAATCTCCGGTGCATC GGTAAGTGCGAACACATCAACGCCACTCTCAACCGCTTTCGTTGATTTATACTCATACGGTTCAATTGATCGAGCCGCGGCTTTTGAATCTTCTACTTCC TTCGCTTCTCTCCCTCTTCAACCAATTCCGAAAGGTTTAATGAACTCGGGTCCTTTTTCCGGTAACTTAACCGGTTCGGGTCCTATTGAGAGAGGGTTTT TATCCGGTCCGATTGAACGTGGGTTCATGTCCGGTCCGATTGAAAAAGATGTTATTGTTAACGGTTCAGATCAGTTTCAGAGAAGCTTATCTCATAGCGG ATTAGGGTTCAAGGCTAAGAAACAAAAGGGTCGTTGGATTCGGGTTCTTCAGAGAGCGATTTCGAAGACTCTGTCTCGTGGGCAGAACTCAATTGTGGCA CCGATCAAAGGGGTTATGACAGTGAAGGAACAACAAGAGTGGGTTATTGCTGCAGCGGAGAAGAATCATAATGAGAATTCGACAGTGAATAGTTTGGTTT TCAGTAATGAGGGTAGTTTGGAAGAAGATGATTCGAAGGAAAGTCAGAATCTTCAATGGGCTCAGGGGAAAGCAGGGGAGGATCGTGTCCATGTTGTGGT TTCCGAGGAACACGGTTGGGTTTTCGTAGGGATTTACGACGGTTTCAATGGTCCTGATGCACCTGATTACCTTCTCTCTAATTTGTACACCTTTGTTTAC AAAGAATTGAAGGGGTTGCTGTGGGATGATAGTTCTGAACAAGTTGCTGTAAATGAGAATCAGAATTTGAAAGTGCAAGATGGTGATGATTGTTCTCAGT GTTGTGGTAATAACAATGGTCCTTGCACGAGTGATGATGCTGCGGAATATGATGATGTTTGCAAGAGAAAGAAGGTTAAGAGTTGCAAGGGTAACTACAA AGGTGCTGCCAAGAAATGGGAGGAGAATCAGAGAAGGTGGAAGTGTGAATGGGATAGGGAAAGGTTAGAGCTTGATAGAAGATTGAAGGAGCAGTTAACT CGATCTAGTTCCGGTGAGAAGAATACTAGCTCGGTTAACCATTTAGATGTGTTGGAAGCTCTTTCTAGGGCTTTGAAGAAAACTGAGGAGTCTTATTTGG ATGTTGCTGATAAGATGGTGATGGAGAATCCCGAGTTGGCATTGATGGGTTCGTGTGCGCTTGTGATGTTAATGAAGGGGGAAGATGTTTATGTGATGAA TGTTGGTGATAGTAGAGCTGTGTTGGCTCAGAAGGCAGAGCCTGATTATTGGTTTGGGAAGATTAGACAGGACTTGGAGAGGATCAATGAAGAAACCATG ACTGACCTTGAATCCTGGGAAGATGCTGATAGATCAAACTTGGTTTCTACTTTAAGTGCTATTCAGCTTACCAAGGATCATAGTACTAGTATTGAAGAGG AAGTCCAGAGAATAAAAAAAGAACATCCAGATGATCCTTATGCAGTATTAAATGATCGTGTTAAGGGTTCTCTGAAGGTCACCCGAGCATTTGGTGCAGG ATTTCTCAAACAGCCCAAGTGGAACAATGCACTTCTGGAGATGTTTAGAATAGACTACGTCGGAACTTCTCCTTACATCAGCTGCCAACCATATCTAAAA CACCATAGGTTAGGCCCGAAGGACAAATTTTTGATTCTATGCTCTGATGGGCTATACCAATACATGTCAAACGAACAAGCGGTTGCTGAAGTTGAGCTTT TCATCACATTGCAACCCGAGGGAGACCCTGCACAGCATTTGGTTGAAGAAGTGTTATTTCGTGCGGCAAAGAAAGCAGGTTTGGACTTCCATGAGTTGCT TGAAATTCCACAAGGCGATAGGCGTCGCTACCATGATGATGTTTCCATCATTGTTATTTCTTTGGAAGGAAGGATATGGAGATCATGTGTATAAGTATAG CGAAAACCATATATCATATAAGAAAAGAGGGAGATGAGGACTATGCTACTGCCTAAGGGCCAGGCATTACCTTTTAGCTGTTTTCCCCTCTTCATGCTCA CTATTTGTAAAATTGTACTAAGCACTGGGATAATGCCT BLAST |
Tissue | pods |
Gene name | LI_gene_181304; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_388842
Blastp | Probable protein phosphatase 2C 4 from Arabidopsis with 67.46% of identity |
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Blastx | Probable protein phosphatase 2C 4 from Arabidopsis with 67.46% of identity |
Eggnog | Phosphatase(COG0631) |
Kegg | Link to kegg annotations (AT1G07630) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019413967.1) |
Pfam | Protein phosphatase 2C (PF00481.20) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |