Ll_transcript_388457

• Id Trinity: TRINITY_DN50983_c3_g1_i12
• Name Transcript: Ll_transcript_388457
• Sequence: AAGAGGAATGACAACTCAGATACTTATGAATAAGGTTGAAGAAACAATGCAAATTATTATTAATAAGAATAGTATTATAAAGGAGAGGATATGCAGTAAT AATAGTGTGGGATGGAGTGATGAGTGGGAAATAAGAACAAACAGTTGGTAGGCACTAGGCAGGAAGGAAATACTAGAGAGAGCAAATAGCCTTGAGCCTG TTGGCGGCAGATTGATCTATGGAATACTGCAGGAATCAAAATTGAAGAATGGATTAGATATTATTTAGATAGAGAATGGATGAATTAGACATTATGAATG AATAGGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAGAATGATAATACCTTGTTGAGAACCCAGAGTGAATGATGGTAGGTGCGT TGGAAGAGTTCATGAAGAGTAGAAGAATCAACATGACGGTAGTTGACGAAGTTTTCACGAACATACTTCGCATAATAACCTCTTGTTTCCTTTGGTAAAT GCCTCACCAGACGGAGTACCTCTGCATAAGCTCTCACCGCCTTCGACATTTCTACAAAACCCTACAACTAACATCCAATTCATCATTTTCTACAATTTCT ATTGGGCTTTTTGGGCCCTAACCTTTATTCATTTCATTTCAATTTCAAAAATTCCAAAATATCTTAACAAATATTTCATTGTTTTGTTTTGTTTGAAGAA GCAAGTCGAAGAAATGAGTTTAGATTCCTCTCGCTCACCAAATCCTTCTTCTAAAAGAACTTTCTCTGATTTTAATCCTGCTTCTTCCTCATTTAATAAT AATAATAATAAGAAGAGGAAGAAGACGATAAAGGCGAAAACCCTAGACGTCGTTTGGGGCTCTAATTCCCATATTGGCAGTTATATGGCAGACAAGAATC GTAAACTGCAGAACCAATTTCACACTGAAGCTGCTGCTGCTGCTGCTGCTTCCACATCCTCTATCTTCTCTGGAGTTTCCATTTTTGTTGATGGTTTCAC CGTTCCTTCCACCCAGGAGCTGCGAAATTACATGTTAAAGTATGGTGGCAGATTTGAAAACTATTTCTCAAGACATCATGTAACTCATATCATCTGCACT AATCTTCCTCACACTAAACTTAAGAACCTCAGAGCCTTCAGCGCAGGCCTGCCTGTCGTCAAACCCACTTGGATTTTAGACTCAGTTGCAGCTAATAGAC TCTTGAGCTGGGTGCCTTACCAACTTGACCAGCTTGTTAATAACCAGCCAAAACTGTCGTCCTTCTTCACATTGAAAAGTCACAAAATGTCAGAGGATGC TTGTACAAATGCGCTTTCTCAAGCAGTACCAGATGTTGAAGATTTGTCTCTCAGGGTTGGGCAATCAAAGGATACATACTCATCTGAAGTTGGGGAGGTG GTTGAACTTAGCAGGCAACTCAGGTTCAGTTCTGAATCTGATGATATTCTCACAGAGAATAATAATGCAATTACAATGGAAGAGCCTACCACTGTTAGAG TTAGATGTGATGAAGAAGGGATAGCAGAAGGAAGCAATGCTGACACTGGAGATGAGAGAAACGTCCAAGGTGAACTTGACCTTAATCATCAAGAATATTG TATGTCAGTTACTACTCCCTGCTCAGAATCCTCACCTGACCAGAATGTAAAAGAATTGCCAAGTTCTGAAATCTCTAGGCCTTCTAAGCATTTTCATTCA ACTCTGGCAGACCCTAATTTTGTGGAAAATTATTTCAAGAGCTCAAGGCTGCATTTCATTGGGACTTGGAGAAATCGTTATCGAAAGCATTTTCCGGTCT CATCTACTTCGTTTAACAATGAAAATTCTAATATTCACGCCTCTCAGAATCCACTCATCGTCCATGTTGACATGGACTGCTTTTTTGTCTCGGTGGTTAT CAGGAACCACCCTGTATTGTTGGACAAGCCAGTAGCAGTCTGTCACTCAAATAATTCGAAGGGAACTTCTGAGATTTCCTCTGCAAACTACCCTGCTCGT GGTTATGGTATTAGGGCTGGTATGTTTGTTCGAGATGCCAAGGCACTTTGTCCCCACCTTGTTATCTTTCCTTACAACTTTGAAGCTTATGAGGAAGTAG CTGATCAATTTTATAGTATACTACATCGACATTGCAGCAAAGTGCAGGCTGTAAGCTGTGATGAAGCTTTTTTAGATGTCACAGATTCAAAGGTTGAAGA TCCTAAACTTTTTGCTGCAGCAATTAGAAAAGAGATCTATGAGACCACTGGATGTACGGCTAGTGCTGGTATAGCTGGAAATATGCTTATGGCTCGCATT GCCACTAGAACTGCAAAACCAAATGGTCAATATCACATAACTCCAGAAAAAGTTGAATACGAGTTAAGTCAACTCTCAATTAATGCACTTCCTGGAATAG GGCATGTTTTACAGCAGAAATTGAAGAAACAGAAAGTTCACACTTGTGGGCAATTGCAAATGATTTCCAAGGCTTCCCTGCAAAAGGATTATGGAGTTAA AACGGGGGAAATGCTGTGGAATTATAGCAGAGGAATTGATAACAGGATGGTTGGGGCCATTCAGGAAAGTAAGTCTATTGGTGCTGATGTAAATTGGGGA GTTAGGTTCAAAGATATGAAAGATTGTGATCACTTCCTAATTAACCTCAGTAAGGAAGTTTCTTTGCGATTGCAAGGTTGCGGAGTGCAGGGGCGCACTT TCATTATCAAGATCAAAAAGAGAAGAAAAGATGCTGATGAACCTGCAAAGTTTATGGGCTGTGGTGACTGTGAAAATTTGAGTCACTCAATAACGATTCC TCTTGCTACTGATAATGTGGAAGTAATCCAAAGAATAGTAAAGCAGCTTTTTGGATTTTTCTACATAGATGTCAAGGATATTCGGGGTGTTGGCTTGCAG GTTTCAAGACTTGAAAGTGTAAATACTTCTAAGCAAGGTGCAGAAAAGTGTACTTTGAAATCATGGCTTACTTCAGGATCTGCAAGTATGGGAAAACAGA AATATCCTATGGGTAACAAGCAGAATATAGATGGCATGTCCAGTCATGGATGTAGAGATTTGCAAGGGTCTTCAGTTCTAATAGACAATAACATAGTAAA TAACCAAGCTAGTGCAGACACAATGTTAACAGCACCTCCTTTATGCCAACTAGATGTCGAAGTAATAAAGAATCTACCGCCAGAAGTATTCTCAGAATTA AATGAAATGTATGGAGGAAAGTTAGTTGATTTTGTTGCTAAAGGGAAAGGAACAAATGAGAGTGCTAGATCTGTACGAAATTTGATTATAGAGCAAGAAG CTATAAAGAAGGATGCAGAACTTTCCTATTCTGACCGAATTCCTCAAAACAAGTTGTTACCAGAAAACAAGGTAATTTTTTTACTTCATTCTTTACTCAA ATACAGTGAAATATAGTCTAATATCACTAAATTACCCTTTTCTGATTTCATTAGTATTTGTTTCTCATAAATCTAACTTCTTCAACAATTCGATATATAT ATTACTTTATTAGCATATTTATTAAATTAATTAGAATAATTGAACTTGATGTTTTATTATTATTTGAGTTTGAACTTGTTATTTGAGTTTCTTTTAGATT ATTTAAACTTTGATAGATTTGACTTAGTATGAGATTGTTGCAGTGTCTGAACTTTATATTTAGATTTATTTAATTTGATAATATTTAATTTTCAATATTA TTGGATTTTTATTTTTTTTTATTTTTTTTATAAACCGTGGATAACGGGGATAAATTTTTCCTTGAAGCGGAGAGCGTGCAAGAAAATTAGTGGTAGGGAT GGGGAGCGGGGGGAGTATTCCCTGCTCCTGCACCACTCCATCAGGGGAGTACTCCCTGCTCCCGCACTGGTCCATTGCTATCCCTATTTGTTTTAAACAA TTACTTTTTTCTGCTTGCTTTTGCCTAGCGTTCATTAAAATCTTCGCTTAATTTTTGTTAGGTTTTGACTCAGTTAGATCTGGCTTTTTTGTCTCATTTT AATATTTTATAACATGCCAATTTTAACTAAAAACATTCATATGCCAATTATATTTTATTATTTTGCTTTGGTTAATTCTAATGGTTTAATTCTTTCATTA ACCTGATCTAACAGGTCAGTATCCGAGTGTGTAGGTTATATGCTTGATTCAAATTGTTCTTACTCTAGCTTCTTTAATTAAGATTGTTCAGTTTGAAGTT TTAATAGGTTGAAAAGCACTTTAATATCTGAGTTTGAAGTTTTAATAGTTTTAATTTAGCAGTGCCATATCCACTCCTTCAGTCCTTTGTGGAAAGGAAG GCTTCCATGTACAGTCAATTAAATTATAATCTCCTTTCGGTAGCTACTTTTATTTTTAGTAGCTTATTGGTTATTGCTATTGATACTGGAGTTACAATAT CTAGAAATCAATGAAACATTATTTTGTTTGCTTTTATTTGTATTTATTTTTCTACTTTTCAAAGAATAGCGTGTTTAGTTACATATATCATGATTAAATC CGAGGTAGTGCAGAAAGAAGCAGAGGTAGTTGAAGTAGGACCAGGCTCAAGGGATGGATCCTATGTCAAGGTTACTCACATTTCAAGTTTTGAGAAAGAT GATTTATTGCCTTCTTCTTTAAGTCAAGTGGATGCTTCAGTGTTACGACAATTACCCGAGGATTTGAAAGCCGCCATTGTTGAGCAGCTTCCTACACACA GGAGGCAAGAGTCTTGCTCCAATGCTGCTGTGCCCCCTCTTAGTGAAATCGGTCAGGCACCATTAGGTATTAAAAGTTCTGAGAATCATTCTGGATCAAG TGGTCACGTTTCGAGTGAAAGTCTATGGGCTGGGAATCCTCCACATTGGATTGATAAGTTTAAAGTTAGCAATTGCTTCATATTAAAGAGGCTTGCAGAA ATATATTACAAATCAGGGTTGACTAGCACATTATCTTCAGTTTTGCACAAAATTATATATGAATTTCACGAGCTAGATCTAGCGCATCAGATTTCTGATG AAGCTATTAACATCACGTGTGAGCTACTGAAGCAGTATACCGAAGAGAAGATAGAAAGAGATATTGAAGAGATTTATATCTGTTTTCGGCTTCTGAAAAG GTTTGCAGCAAAGTCACAATTTTTCCTACAAGTGTACAATACTCTATTTCCGCACCTCCAGGCAGCTGTTGATGACGCCTATGGAGGGACCTTGTTTATA CCATCATAGTAGCATGCAAATAGTCAAAATCTCATCTAATGTGAGCAACTCAAGAAAAAGTCACCAGTTTAGCTGTATAATCTGGACAGATCACAAACCA ATGGTTTCAATCCACTATGACATCCTGCAGAGTATGTTTGACTTTACCATGATAGCTAAACTTTTTCTGCAGCAAATTTGCTTGTTCTGGTGGATGTTGT ATTTAATTTCTAGTGATATTTTTTCAATTTTATGCTTCATAGTGTCTGTTTTCAAAATTACCATTTTGTTCTGAAATTGTAAGATCCTTTTGTGAGTTTC GTCACTCCTTGGTCCTGCAAGACCTTTTGTCTGATGTAAATCCTCATGTTAGTCTTTTCACCAGCATTAGTATTTTAATATGCCTTTGTGGCTGTGCAAT TAATGTATAACTTCTTTATAGTTCATTTCATCCTTTTCATGATCTCTATGTAATTATAAAATTCCTCCATATTCTCAA
• Tissue: pods
• Gene name: LI_gene_181475;
• Additional information: details;

Expression of Ll_transcript_388457

FPKM

• PAB: 0.5
• PNAB: 1.8
• PS1: 1.3
• PS2: 1.4
• PS3: 2.3
• PW1: 1.3
• PW2: 1
• PW3: 1.1

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_388457

• Blastp: DNA repair protein REV1 from Arabidopsis with 54.7% of identity
• Blastx: DNA repair protein REV1 from Arabidopsis with 54.64% of identity
• Eggnog: Poorly processive error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by polIV. Exhibits no 3-5 exonuclease (proofreading) activity. May be involved in translesional synthesis in conjunction with the beta clamp from polIII (By similarity)(COG0389)
• Kegg: Link to kegg annotations (AT5G44750)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019421546.1)
• Pfam: BRCA1 C Terminus (BRCT) domain (PF00533.25)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;