| Id Trinity | TRINITY_DN50983_c3_g1_i18 |
|---|---|
| Name Transcript | Ll_transcript_388464 |
| Sequence | CTTACATTATTAAATGATTATTATTAAATAATATATTAATAATGAACACTGAGATGATGTATACTTTTATCATGTGAGAGATGATGAACATTAAGAAGGC GATGTGTTTTAGGAGGTAAATAGAAAATAGAAAATAATTGGTCATGTTATCACATGTGTGAGGGTGTATAAGAAGGGGTGAGAAATTTTTGGAGGGAAAA TAAAGTGATGAGGAGGTGAGCTTTTTTTCTTATATAGTAATAGATTAATCATATTTTCATTCAGCTTTTTCCGTTGATTATTAGAGTAATCCCTTAAAGT CATAATATAAAAAGTGGACATTATTGTAAAAAAGTGTAACAAGAGAAATGATCTTGTGGCAGTGTCCTAGATTTTTGTTTACTCCATTCTTTTTGGTCCA AAAATTGAATTCCGTTGTCTTTTCCAAGTAAGTATGACATGTTATGTAGCAGAAGAAGCTACAAAAACAAGTTGAAACAAAGGCAATGCTCATTATTTCA TAAAGAAGACAAACAAAATGGGCACCCCACTTTTCTGTCCACTATCAATCTCTTTCCACTGCATCAAAAATTTACCATTTTCATCCACACACACCATATA TATGATCATATATTACCCCACAAACAATAAAGTTTCATTTTTTACCAATTACCACTTACCACATGAATGAATGAATGAATGAATGAATGAGAATGATAAT ACCTTGTTGAGAACCCAGAGTGAATGATGGTAGGTGCGTTGGAAGAGTTCATGAAGAGTAGAAGAATCAACATGACGGTAGTTGACGAAGTTTTCACGAA CATACTTCGCATAATAACCTCTTGTTTCCTTTGGTAAATGCCTCACCAGACGGAGTACCTCTGCATAAGCTCTCACCGCCTTCGACATTTCTACAAAACC CTACAACTAACATCCAATTCATCATTTTCTACAATTTCTATTGGGCTTTTTGGGCCCTAACCTTTATTCATTTCATTTCAATTTCAAAAATTCCAAAATA TCTTAACAAATATTTCATTGTTTTGTTTTGTTTGAAGAAGCAAGTCGAAGAAATGAGTTTAGATTCCTCTCGCTCACCAAATCCTTCTTCTAAAAGAACT TTCTCTGATTTTAATCCTGCTTCTTCCTCATTTAATAATAATAATAATAAGAAGAGGAAGAAGACGATAAAGGCGAAAACCCTAGACGTCGTTTGGGGCT CTAATTCCCATATTGGCAGTTATATGGCAGACAAGAATCGTAAACTGCAGAACCAATTTCACACTGAAGCTGCTGCTGCTGCTGCTGCTTCCACATCCTC TATCTTCTCTGGAGTTTCCATTTTTGTTGATGGTTTCACCGTTCCTTCCACCCAGGAGCTGCGAAATTACATGTTAAAGTATGGTGGCAGATTTGAAAAC TATTTCTCAAGACATCATGTAACTCATATCATCTGCACTAATCTTCCTCACACTAAACTTAAGAACCTCAGAGCCTTCAGCGCAGGCCTGCCTGTCGTCA AACCCACTTGGATTTTAGACTCAGTTGCAGCTAATAGACTCTTGAGCTGGGTGCCTTACCAACTTGACCAGCTTGTTAATAACCAGCCAAAACTGTCGTC CTTCTTCACATTGAAAAGTCACAAAATGTCAGAGGATGCTTGTACAAATGCGCTTTCTCAAGCAGTACCAGATGTTGAAGATTTGTCTCTCAGGGTTGGG CAATCAAAGGATACATACTCATCTGAAGTTGGGGAGGTGGTTGAACTTAGCAGGCAACTCAGGTTCAGTTCTGAATCTGATGATATTCTCACAGAGAATA ATAATGCAATTACAATGGAAGAGCCTACCACTGTTAGAGTTAGATGTGATGAAGAAGGGATAGCAGAAGGAAGCAATGCTGACACTGGAGATGAGAGAAA CGTCCAAGGTGAACTTGACCTTAATCATCAAGAATATTGTATGTCAGTTACTACTCCCTGCTCAGAATCCTCACCTGACCAGAATGTAAAAGAATTGCCA AGTTCTGAAATCTCTAGGCCTTCTAAGCATTTTCATTCAACTCTGGCAGACCCTAATTTTGTGGAAAATTATTTCAAGAGCTCAAGGCTGCATTTCATTG GGACTTGGAGAAATCGTTATCGAAAGCATTTTCCGGTCTCATCTACTTCGTTTAACAATGAAAATTCTAATATTCACGCCTCTCAGAATCCACTCATCGT CCATGTTGACATGGACTGCTTTTTTGTCTCGGTGGTTATCAGGAACCACCCTGTATTGTTGGACAAGCCAGTAGCAGTCTGTCACTCAAATAATTCGAAG GGAACTTCTGAGATTTCCTCTGCAAACTACCCTGCTCGTGGTTATGGTATTAGGGCTGGTATGTTTGTTCGAGATGCCAAGGCACTTTGTCCCCACCTTG TTATCTTTCCTTACAACTTTGAAGCTTATGAGGAAGTAGCTGATCAATTTTATAGTATACTACATCGACATTGCAGCAAAGTGCAGGCTGTAAGCTGTGA TGAAGCTTTTTTAGATGTCACAGATTCAAAGGTTGAAGATCCTAAACTTTTTGCTGCAGCAATTAGAAAAGAGATCTATGAGACCACTGGATGTACGGCT AGTGCTGGTATAGCTGGAAATATGCTTATGGCTCGCATTGCCACTAGAACTGCAAAACCAAATGGTCAATATCACATAACTCCAGAAAAAGTTGAATACG AGTTAAGTCAACTCTCAATTAATGCACTTCCTGGAATAGGGCATGTTTTACAGCAGAAATTGAAGAAACAGAAAGTTCACACTTGTGGGCAATTGCAAAT GATTTCCAAGGCTTCCCTGCAAAAGGATTATGGAGTTAAAACGGGGGAAATGCTGTGGAATTATAGCAGAGGAATTGATAACAGGATGGTTGGGGCCATT CAGGAAAGTAAGTCTATTGGTGCTGATGTAAATTGGGGAGTTAGGTTCAAAGATATGAAAGATTGTGATCACTTCCTAATTAACCTCAGTAAGGAAGTTT CTTTGCGATTGCAAGGTTGCGGAGTGCAGGGGCGCACTTTCATTATCAAGATCAAAAAGAGAAGAAAAGATGCTGATGAACCTGCAAAGTTTATGGGCTG TGGTGACTGTGAAAATTTGAGTCACTCAATAACGATTCCTCTTGCTACTGATAATGTGGAAGTAATCCAAAGAATAGTAAAGCAGCTTTTTGGATTTTTC TACATAGATGTCAAGGATATTCGGGGTGTTGGCTTGCAGGTTTCAAGACTTGAAAGTGTAAATACTTCTAAGCAAGGTGCAGAAAAGTGTACTTTGAAAT CATGGCTTACTTCAGGATCTGCAAGTATGGGAAAACAGAAATATCCTATGGGTAACAAGCAGAATATAGATGGCATGTCCAGTCATGGATGTAGAGATTT GCAAGGGTCTTCAGTTCTAATAGACAATAACATAGTAAATAACCAAGCTAGTGCAGACACAATGTTAACAGCACCTCCTTTATGCCAACTAGATGTCGAA GTAATAAAGAATCTACCGCCAGAAGTATTCTCAGAATTAAATGAAATGTATGGAGGAAAGTTAGTTGATTTTGTTGCTAAAGGGAAAGGAACAAATGAGA GTGCTAGATCTGTACGAAATTTGATTATAGAGCAAGAAGCTATAAAGAAGGATGCAGAACTTTCCTATTCTGACCGAATTCCTCAAAACAAGTTGTTACC AGAAAACAAGAAAGAAGCAGAGGTAGTTGAAGTAGGACCAGGCTCAAGGGATGGATCCTATGTCAAGGTTACTCACATTTCAAGTTTTGAGAAAGATGAT TTATTGCCTTCTTCTTTAAGTCAAGTGGATGCTTCAGTGTTACGACAATTACCCGAGGATTTGAAAGCCGCCATTGTTGAGCAGCTTCCTACACACAGGA GGCAAGAGTCTTGCTCCAATGCTGCTGTGCCCCCTCTTAGTGAAATCGGTCAGGCACCATTAGGTATTAAAAGTTCTGAGAATCATTCTGGATCAAGTGG TCACGTTTCGAGTGAAAGTCTATGGGCTGGGAATCCTCCACATTGGATTGATAAGTTTAAAGTTAGCAATTGCTTCATATTAAAGAGGCTTGCAGAAATA TATTACAAATCAGGGTTGACTAGCACATTATCTTCAGTTTTGCACAAAATTATATATGAATTTCACGAGCTAGATCTAGCGCATCAGATTTCTGATGAAG CTATTAACATCACGTGTGAGCTACTGAAGCAGTATACCGAAGAGAAGATAGAAAGAGATATTGAAGAGATTTATATCTGTTTTCGGCTTCTGAAAAGGT BLAST |
| Tissue | pods |
| Gene name | LI_gene_181475; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_388464
| Blastp | DNA repair protein REV1 from Arabidopsis with 50.14% of identity |
|---|---|
| Blastx | DNA repair protein REV1 from Arabidopsis with 49.91% of identity |
| Eggnog | Poorly processive error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by polIV. Exhibits no 3-5 exonuclease (proofreading) activity. May be involved in translesional synthesis in conjunction with the beta clamp from polIII (By similarity)(COG0389) |
| Kegg | Link to kegg annotations (AT5G44750) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019421546.1) |
| Pfam | BRCA1 C Terminus (BRCT) domain (PF00533.25) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |