| Id Trinity | TRINITY_DN50983_c3_g1_i2 |
|---|---|
| Name Transcript | Ll_transcript_388446 |
| Sequence | CTTACATTATTAAATGATTATTATTAAATAATATATTAATAATGAACACTGAGATGATGTATACTTTTATCATGTGAGAGATGATGAACATTAAGAAGGC GATGTGTTTTAGGAGGTAAATAGAAAATAGAAAATAATTGGTCATGTTATCACATGTGTGAGGGTGTATAAGAAGGGGTGAGAAATTTTTGGAGGGAAAA TAAAGTGATGAGGAGGTGAGCTTTTTTTCTTATATAGTAATAGATTAATCATATTTTCATTCAGCTTTTTCCGTTGATTATTAGAGTAATCCCTTAAAGT CATAATATAAAAAGTGGACATTATTGTAAAAAAGTGTAACAAGAGAAATGATCTTGTGGCAGTGTCCTAGATTTTTGTTTACTCCATTCTTTTTGGTCCA AAAATTGAATTCCGTTGTCTTTTCCAAGTAAGTATGACATGTTATGTAGCAGAAGAAGCTACAAAAACAAGTTGAAACAAAGGCAATGCTCATTATTTCA TAAAGAAGACAAACAAAATGGGCACCCCACTTTTCTGTCCACTATCAATCTCTTTCCACTGCATCAAAAATTTACCATTTTCATCCACACACACCATATA TATGATCATATATTACCCCACAAACAATAAAGTTTCATTTTTTACCAATTACCACTTACCACATGAATGAATGAATGAATGAATGAATGAGAATGATAAT ACCTTGTTGAGAACCCAGAGTGAATGATGGTAGGTGCGTTGGAAGAGTTCATGAAGAGTAGAAGAATCAACATGACGGTAGTTGACGAAGTTTTCACGAA CATACTTCGCATAATAACCTCTTGTTTCCTTTGGTAAATGCCTCACCAGACGGAGTACCTCTGCATAAGCTCTCACCGCCTTCGACATTTCTACAAAACC CTACAACTAACATCCAATTCATCATTTTCTACAATTTCTATTGGGCTTTTTGGGCCCTAACCTTTATTCATTTCATTTCAATTTCAAAAATTCCAAAATA TCTTAACAAATATTTCATTGTTTTGTTTTGTTTGAAGAAGCAAGTCGAAGAAATGAGTTTAGATTCCTCTCGCTCACCAAATCCTTCTTCTAAAAGAACT TTCTCTGATTTTAATCCTGCTTCTTCCTCATTTAATAATAATAATAATAAGAAGAGGAAGAAGACGATAAAGGCGAAAACCCTAGACGTCGTTTGGGGCT CTAATTCCCATATTGGCAGTTATATGGCAGACAAGAATCGTAAACTGCAGAACCAATTTCACACTGAAGCTGCTGCTGCTGCTGCTGCTTCCACATCCTC TATCTTCTCTGGAGTTTCCATTTTTGTTGATGGTTTCACCGTTCCTTCCACCCAGGAGCTGCGAAATTACATGTTAAAGTATGGTGGCAGATTTGAAAAC TATTTCTCAAGACATCATGTAACTCATATCATCTGCACTAATCTTCCTCACACTAAACTTAAGAACCTCAGAGCCTTCAGCGCAGGCCTGCCTGTCGTCA AACCCACTTGGATTTTAGACTCAGTTGCAGCTAATAGACTCTTGAGCTGGGTGCCTTACCAACTTGACCAGCTTGTTAATAACCAGCCAAAACTGTCGTC CTTCTTCACATTGAAAAGTCACAAAATGTCAGAGGATGCTTGTACAAATGCGCTTTCTCAAGCAGTACCAGATGTTGAAGATTTGTCTCTCAGGGTTGGG CAATCAAAGGATACATACTCATCTGAAGTTGGGGAGGTGGTTGAACTTAGCAGGCAACTCAGGTTCAGTTCTGAATCTGATGATATTCTCACAGAGAATA ATAATGCAATTACAATGGAAGAGCCTACCACTGTTAGAGTTAGATGTGATGAAGAAGGGATAGCAGAAGGAAGCAATGCTGACACTGGAGATGAGAGAAA CGTCCAAGGTGAACTTGACCTTAATCATCAAGAATATTGTATGTCAGTTACTACTCCCTGCTCAGAATCCTCACCTGACCAGAATGTAAAAGAATTGCCA AGTTCTGAAATCTCTAGGCCTTCTAAGCATTTTCATTCAACTCTGGCAGACCCTAATTTTGTGGAAAATTATTTCAAGAGCTCAAGGCTGCATTTCATTG GGACTTGGAGAAATCGTTATCGAAAGCATTTTCCGGTCTCATCTACTTCGTTTAACAATGAAAATTCTAATATTCACGCCTCTCAGAATCCACTCATCGT CCATGTTGACATGGACTGCTTTTTTGTCTCGGTGGTTATCAGGAACCACCCTGTATTGTTGGACAAGCCAGTAGCAGTCTGTCACTCAAATAATTCGAAG GGAACTTCTGAGATTTCCTCTGCAAACTACCCTGCTCGTGGTTATGGTATTAGGGCTGGTATGTTTGTTCGAGATGCCAAGGCACTTTGTCCCCACCTTG TTATCTTTCCTTACAACTTTGAAGCTTATGAGGAAGTAGCTGATCAATTTTATAGTATACTACATCGACATTGCAGCAAAGTGCAGGCTGTAAGCTGTGA TGAAGCTTTTTTAGATGTCACAGATTCAAAGGTTGAAGATCCTAAACTTTTTGCTGCAGCAATTAGAAAAGAGATCTATGAGACCACTGGATGTACGGCT AGTGCTGGTATAGCTGGAAATATGCTTATGGCTCGCATTGCCACTAGAACTGCAAAACCAAATGGTCAATATCACATAACTCCAGAAAAAGTTGAATACG AGTTAAGTCAACTCTCAATTAATGCACTTCCTGGAATAGGGCATGTTTTACAGCAGAAATTGAAGAAACAGAAAGTTCACACTTGTGGGCAATTGCAAAT GATTTCCAAGGTTGTACTATCTCCTCACTTATTATATAGTTTCTTTGATTTGTTCTGCTATTCTTAAAGTTCAGTTGCTATTTCTTCTAAAATTTGTACT TTCTGCTTTCAGTCTATTATCAGTGTTCTTGTTTTGGTCTCAACTAAAGAGAATACACACTTAGAGGAAAATATTTGATTTGTTGAAATTTTGGAAACAA CTTAGAAGTTAGAAGACAATAATCATTGAAAATGAGAAGCTCATTGACGCAATAAAATATAATGCTAGAATATACGGAAAAAACCTTGAAGTGCTTCAAA CAATTATATTGCTACTGGGTTGATTTAGAGATCAATGCTTTGTCAATGGACATGATTCATGATAGAGCTTAATGACGTCGTTCGGTCCATTTAACCGACC CAACCTATTGGGACTAAAGTTTGGTTGTTGTAAAAGCTCATTTACTTGCATACTCTGTAGTTATGTCTCACTTTTATTTTGGGCATCTAGTTGAATAACA TTTGTAATTTTCAAGATTCTGTAATTGCTTTCCTGGCGTCTGCAGGCTTCCCTGCAAAAGGATTATGGAGTTAAAACGGGGGAAATGCTGTGGAATTATA GCAGAGGAATTGATAACAGGATGGTTGGGGCCATTCAGGAAAGTAAGTCTATTGGTGCTGATGTAAATTGGGGAGTTAGGTTCAAAGATATGAAAGATGT TGGTATTTTTATACACTGTATCTTTTATTTTAACTTTCAAATTTCAATCTTACAAAATACTGTATCATTGAAAATGCTCATATAAAAGTTATTCCAGTGT GATCACTTCCTAATTAACCTCAGTAAGGAAGTTTCTTTGCGATTGCAAGGTTGCGGAGTGCAGGGGCGCACTTTCATTATCAAGATCAAAAAGAGAAGAA AAGATGCTGATGAACCTGCAAAGTTTATGGGCTGTGGTGACTGTGAAAATTTGAGTCACTCAATAACGATTCCTCTTGCTACTGATAATGTGGAAGTAAT CCAAAGAATAGTAAAGCAGCTTTTTGGATTTTTCTACATAGATGTCAAGGATATTCGGGGTGTTGGCTTGCAGGTTTCAAGACTTGAAAGTGTAAATACT TCTAAGCAAGGTGCAGAAAAGTGTACTTTGAAATCATGGCTTACTTCAGGATCTGCAAGTATGGGAAAACAGAAATATCCTATGGATTGTGGTGGTTTTT TCTTTTAGGTAACAAGCAGAATATAGATGGCATGTCCAGTCATGGATGTAGAGATTTGCAAGGGTCTTCAGTTCTAATAGACAATAACATAGTAAATAAC CAAGCTAGTGCAGACACAATGTTAACAGCACCTCCTTTATGCCAACTAGATGTCGAAGTAATAAAGAATCTACCGCCAGAAGTATTCTCAGAATTAAATG AAATGTATGGAGGAAAGTTAGTTGATTTTGTTGCTAAAGGGAAAGGAACAAATGAGAGTGCTAGATCTGTACGAAATTTGATTATAGAGCAAGAAGGCAA GTTTTTCTATGTTATATTATTATAGCTGCTTTTACTAATACCCAAAATCATGCAGAAAAAGGCTACTTTTACTCATGATTCATGAATGTTTGGCAATGCC CCATATGCTTTTTAATTGTGTTTCTTAGCAGCTATAAAGAAGGATGCAGAACTTTCCTATTCTGACCGAATTCCTCAAAACAAGTTGTTACCAGAAAACA AGGTAATTTTTTTACTTCATTCTTTACTCAAATACAGTGAAATATAGTCTAATATCACTAAATTACCCTTTTCTGATTTCATTAGTATTTGTTTCTCATA AATCTAACTTCTTCAACAATTCGATATATATATTACTTTATTAGCATATTTATTAAATTAATTAGAATAATTGAACTTGATGTTTTATTATTATTTGAGT TTGAACTTGTTATTTGAGTTTCTTTTAGATTATTTAAACTTTGATAGATTTGACTTAGTATGAGATTGTTGCAGTGTCTGAACTTTATATTTAGATTTAT TTAATTTGATAATATTTAATTTTCAATATTATTGGATTTTTATTTTTTTTTATTTTTTTTATAAACCGTGGATAACGGGGATAAATTTTTCCTTGAAGCG GAGAGCGTGCAAGAAAATTAGTGGTAGGGATGGGGAGCGGGGGGAGTATTCCCTGCTCCTGCACCACTCCATCAGGGGAGTACTCCCTGCTCCCGCACTG GTCCATTGCTATCCCTATTTGTTTTAAACAATTACTTTTTTCTGCTTGCTTTTGCCTAGCGTTCATTAAAATCTTCGCTTAATTTTTGTTAGGTTTTGAC TCAGTTAGATCTGGCTTTTTTGTCTCATTTTAATATTTTATAACATGCCAATTTTAACTAAAAACATTCATATGCCAATTATATTTTATTATTTTGCTTT GGTTAATTCTAATGGTTTAATTCTTTCATTAACCTGATCTAACAGGTCAGTATCCGAGTGTGTAGGTTATATGCTTGATTCAAATTGTTCTTACTCTAGC TTCTTTAATTAAGATTGTTCAGTTTGAAGTTTTAATAGGTTGAAAAGCACTTTAATATCTGAGTTTGAAGTTTTAATAGTTTTAATTTAGCAGTGCCATA TCCACTCCTTCAGTCCTTTGTGGAAAGGAAGGCTTCCATGTACAGTCAATTAAATTATAATCTCCTTTCGGTAGCTACTTTTATTTTTAGTAGCTTATTG GTTATTGCTATTGATACTGGAGTTACAATATCTAGAAATCAATGAAACATTATTTTGTTTGCTTTTATTTGTATTTATTTTTCTACTTTTCAAAGAATAG CGTGTTTAGTTACATATATCATGATTAAATCCGAGGTAGTGCAGAAAGAAGCAGAGGTAGTTGAAGTAGGACCAGGCTCAAGGGATGGATCCTATGTCAA GGTTACTCACATTTCAAGTTTTGAGAAAGATGATTTATTGCCTTCTTCTTTAAGTCAAGTGGATGCTTCAGTGTTACGACAATTACCCGAGGATTTGAAA GCCGCCATTGTTGAGCAGCTTCCTACACACAGGAGGCAAGAGTCTTGCTCCAATGCTGCTGTGCCCCCTCTTAGTGAAATCGGTCAGGCACCATTAGGTA TTAAAAGTTCTGAGAATCATTCTGGATCAAGTGGTCACGTTTCGAGTGAAAGTCTATGGGCTGGGAATCCTCCACATTGGATTGATAAGTTTAAAGTTAG CAATTGCTTCATATTAAAGAGGCTTGCAGAAATATATTACAAATCAGGGTTGACTAGCACATTATCTTCAGTTTTGCACAAAATTATATATGAATTTCAC GAGCTAGATCTAGCGCATCAGATTTCTGATGAAGCTATTAACATCACGTGTGAGCTACTGAAGCAGTATACCGAAGAGAAGATAGAAAGAGATATTGAAG AGATTTATATCTGTTTTCGGCTTCTGAAAAGGTTTGCAGCAAAGTCACAATTTTTCCTACAAGTGTACAATACTCTATTTCCGCACCTCCAGGCAGCTGT TGATGACGCCTATGGAGGGACCTTGTTTATACCATCATAGTAGCATGCAAATAGTCAAAATCTCATCTAATGTGAGCAACTCAAGAAAAAGTCACCAGTT TAGCTGTATAATCTGGACAGATCACAAACCAATGGTTTCAATCCACTATGACATCCTGCAGAGTATGTTTGACTTTACCATGATAGCTAAACTTTTTCTG CAGCAAATTTGCTTGTTCTGGTGGATGTTGTATTTAATTTCTAGTGATATTTTTTCAATTTTATGCTTCATAGTGTCTGTTTTCAAAATTACCATTTTGT TCTGAAATTGTAAGATCCTTTTGTGAGTTTCGTCACTCCTTGGTCCTGCAAGACCTTTTGTCTGATGTAAATCCTCATGTTAGTCTTTTCACCAGCATTA GTATTTTAATATGCCTTTGTGGCTGTGCAATTAATGTATAACTTCTTTATAGTTCATTTCATCCTTTTCATGATCTCTATGTAATTATAAAATTCCTCCA TATTCTCAA BLAST |
| Tissue | pods |
| Gene name | LI_gene_181475; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_388446
| Blastp | DNA repair protein REV1 from Arabidopsis with 54.56% of identity |
|---|---|
| Blastx | DNA repair protein REV1 from Arabidopsis with 54.72% of identity |
| Eggnog | Poorly processive error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by polIV. Exhibits no 3-5 exonuclease (proofreading) activity. May be involved in translesional synthesis in conjunction with the beta clamp from polIII (By similarity)(COG0389) |
| Kegg | Link to kegg annotations (AT5G44750) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019421546.1) |
| Pfam | BRCA1 C Terminus (BRCT) domain (PF00533.25) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |