| Id Trinity | TRINITY_DN50983_c3_g1_i24 |
|---|---|
| Name Transcript | Ll_transcript_388473 |
| Sequence | AAGAGGAATGACAACTCAGATACTTATGAATAAGGTTGAAGAAACAATGCAAATTATTATTAATAAGAATAGTATTATAAAGGAGAGGATATGCAGTAAT AATAGTGTGGGATGGAGTGATGAGTGGGAAATAAGAACAAACAGTTGGTAGGCACTAGGCAGGAAGGAAATACTAGAGAGAGCAAATAGCCTTGAGCCTG TTGGCGGCAGATTGATCTATGGAATACTGCAGGAATCAAAATTGAAGAATGGATTAGATATTATTTAGATAGAGAATGGATGAATTAGACATTATGAATG AATAGGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAGAATGATAATACCTTGTTGAGAACCCAGAGTGAATGATGGTAGGTGCGT TGGAAGAGTTCATGAAGAGTAGAAGAATCAACATGACGGTAGTTGACGAAGTTTTCACGAACATACTTCGCATAATAACCTCTTGTTTCCTTTGGTAAAT GCCTCACCAGACGGAGTACCTCTGCATAAGCTCTCACCGCCTTCGACATTTCTACAAAACCCTACAACTAACATCCAATTCATCATTTTCTACAATTTCT ATTGGGCTTTTTGGGCCCTAACCTTTATTCATTTCATTTCAATTTCAAAAATTCCAAAATATCTTAACAAATATTTCATTGTTTTGTTTTGTTTGAAGAA GCAAGTCGAAGAAATGAGTTTAGATTCCTCTCGCTCACCAAATCCTTCTTCTAAAAGAACTTTCTCTGATTTTAATCCTGCTTCTTCCTCATTTAATAAT AATAATAATAAGAAGAGGAAGAAGACGATAAAGGCGAAAACCCTAGACGTCGTTTGGGGCTCTAATTCCCATATTGGCAGTTATATGGCAGACAAGAATC GTAAACTGCAGAACCAATTTCACACTGAAGCTGCTGCTGCTGCTGCTGCTTCCACATCCTCTATCTTCTCTGGAGTTTCCATTTTTGTTGATGGTTTCAC CGTTCCTTCCACCCAGGAGCTGCGAAATTACATGTTAAAGTATGGTGGCAGATTTGAAAACTATTTCTCAAGACATCATGTAACTCATATCATCTGCACT AATCTTCCTCACACTAAACTTAAGAACCTCAGAGCCTTCAGCGCAGGCCTGCCTGTCGTCAAACCCACTTGGATTTTAGACTCAGTTGCAGCTAATAGAC TCTTGAGCTGGGTGCCTTACCAACTTGACCAGCTTGTTAATAACCAGCCAAAACTGTCGTCCTTCTTCACATTGAAAAGTCACAAAATGTCAGAGGATGC TTGTACAAATGCGCTTTCTCAAGCAGTACCAGATGTTGAAGATTTGTCTCTCAGGGTTGGGCAATCAAAGGATACATACTCATCTGAAGTTGGGGAGGTG GTTGAACTTAGCAGGCAACTCAGGTTCAGTTCTGAATCTGATGATATTCTCACAGAGAATAATAATGCAATTACAATGGAAGAGCCTACCACTGTTAGAG TTAGATGTGATGAAGAAGGGATAGCAGAAGGAAGCAATGCTGACACTGGAGATGAGAGAAACGTCCAAGGTGAACTTGACCTTAATCATCAAGAATATTG TATGTCAGTTACTACTCCCTGCTCAGAATCCTCACCTGACCAGAATGTAAAAGAATTGCCAAGTTCTGAAATCTCTAGGCCTTCTAAGCATTTTCATTCA ACTCTGGCAGACCCTAATTTTGTGGAAAATTATTTCAAGAGCTCAAGGCTGCATTTCATTGGGACTTGGAGAAATCGTTATCGAAAGCATTTTCCGGTCT CATCTACTTCGTTTAACAATGAAAATTCTAATATTCACGCCTCTCAGAATCCACTCATCGTCCATGTTGACATGGACTGCTTTTTTGTCTCGGTGGTTAT CAGGAACCACCCTGTATTGTTGGACAAGCCAGTAGCAGTCTGTCACTCAAATAATTCGAAGGGAACTTCTGAGATTTCCTCTGCAAACTACCCTGCTCGT GGTTATGGTATTAGGGCTGGTATGTTTGTTCGAGATGCCAAGGCACTTTGTCCCCACCTTGTTATCTTTCCTTACAACTTTGAAGCTTATGAGGAAGTAG CTGATCAATTTTATAGTATACTACATCGACATTGCAGCAAAGTGCAGGCTGTAAGCTGTGATGAAGCTTTTTTAGATGTCACAGATTCAAAGGTTGAAGA TCCTAAACTTTTTGCTGCAGCAATTAGAAAAGAGATCTATGAGACCACTGGATGTACGGCTAGTGCTGGTATAGCTGGAAATATGCTTATGGCTCGCATT GCCACTAGAACTGCAAAACCAAATGGTCAATATCACATAACTCCAGAAAAAGTTGAATACGAGTTAAGTCAACTCTCAATTAATGCACTTCCTGGAATAG GGCATGTTTTACAGCAGAAATTGAAGAAACAGAAAGTTCACACTTGTGGGCAATTGCAAATGATTTCCAAGGCTTCCCTGCAAAAGGATTATGGAGTTAA AACGGGGGAAATGCTGTGGAATTATAGCAGAGGAATTGATAACAGGATGGTTGGGGCCATTCAGGAAAGTAAGTCTATTGGTGCTGATGTAAATTGGGGA GTTAGGTTCAAAGATATGAAAGATTGTGATCACTTCCTAATTAACCTCAGTAAGGAAGTTTCTTTGCGATTGCAAGGTTGCGGAGTGCAGGGGCGCACTT TCATTATCAAGATCAAAAAGAGAAGAAAAGATGCTGATGAACCTGCAAAGTTTATGGGCTGTGGTGACTGTGAAAATTTGAGTCACTCAATAACGATTCC TCTTGCTACTGATAATGTGGAAGTAATCCAAAGAATAGTAAAGCAGCTTTTTGGATTTTTCTACATAGATGTCAAGGATATTCGGGGTGTTGGCTTGCAG GTTTCAAGACTTGAAAGTGTAAATACTTCTAAGCAAGGTGCAGAAAAGTGTACTTTGAAATCATGGCTTACTTCAGGATCTGCAAGTATGGGAAAACAGA AATATCCTATGGGTAACAAGCAGAATATAGATGGCATGTCCAGTCATGGATGTAGAGATTTGCAAGGGTCTTCAGTTCTAATAGACAATAACATAGTAAA TAACCAAGCTAGTGCAGACACAATGTTAACAGCACCTCCTTTATGCCAACTAGATGTCGAAGTAATAAAGAATCTACCGCCAGAAGTATTCTCAGAATTA AATGAAATGTATGGAGGAAAGTTAGTTGATTTTGTTGCTAAAGGGAAAGGAACAAATGAGAGTGCTAGATCTGTACGAAATTTGATTATAGAGCAAGAAG GCAAGTTTTTCTATGTTATATTATTATAGCTGCTTTTACTAATACCCAAAATCATGCAGAAAAAGGCTACTTTTACTCATGATTCATGAATGTTTGGCAA TGCCCCATATGCTTTTTAATTGTGTTTCTTAGCAGCTATAAAGAAGGATGCAGAACTTTCCTATTCTGACCGAATTCCTCAAAACAAGTTGTTACCAGAA AACAAGGTAATTTTTTTACTTCATTCTTTACTCAAATACAGTGAAATATAGTCTAATATCACTAAATTACCCTTTTCTGATTTCATTAGTATTTGTTTCT CATAAATCTAACTTCTTCAACAATTCGATATATATATTACTTTATTAGCATATTTATTAAATTAATTAGAATAATTGAACTTGATGTTTTATTATTATTT GAGTTTGAACTTGTTATTTGAGTTTCTTTTAGATTATTTAAACTTTGATAGATTTGACTTAGTATGAGATTGTTGCAGTGTCTGAACTTTATATTTAGAT TTATTTAATTTGATAATATTTAATTTTCAATATTATTGGATTTTTATTTTTTTTTATTTTTTTTATAAACCGTGGATAACGGGGATAAATTTTTCCTTGA AGCGGAGAGCGTGCAAGAAAATTAGTGGTAGGGATGGGGAGCGGGGGGAGTATTCCCTGCTCCTGCACCACTCCATCAGGGGAGTACTCCCTGCTCCCGC ACTGGTCCATTGCTATCCCTATTTGTTTTAAACAATTACTTTTTTCTGCTTGCTTTTGCCTAGCGTTCATTAAAATCTTCGCTTAATTTTTGTTAGGTTT TGACTCAGTTAGATCTGGCTTTTTTGTCTCATTTTAATATTTTATAACATGCCAATTTTAACTAAAAACATTCATATGCCAATTATATTTTATTATTTTG CTTTGGTTAATTCTAATGGTTTAATTCTTTCATTAACCTGATCTAACAGGTCAGTATCCGAGTGTGTAGGTTATATGCTTGATTCAAATTGTTCTTACTC TAGCTTCTTTAATTAAGATTGTTCAGTTTGAAGTTTTAATAGGTTGAAAAGCACTTTAATATCTGAGTTTGAAGTTTTAATAGTTTTAATTTAGCAGTGC CATATCCACTCCTTCAGTCCTTTGTGGAAAGGAAGGCTTCCATGTACAGTCAATTAAATTATAATCTCCTTTCGGTAGCTACTTTTATTTTTAGTAGCTT ATTGGTTATTGCTATTGATACTGGAGTTACAATATCTAGAAATCAATGAAACATTATTTTGTTTGCTTTTATTTGTATTTATTTTTCTACTTTTCAAAGA ATAGCGTGTTTAGTTACATATATCATGATTAAATCCGAGGTAGTGCAGAAAGAAGCAGAGGTAGTTGAAGTAGGACCAGGCTCAAGGGATGGATCCTATG TCAAGGTTACTCACATTTCAAGTTTTGAGAAAGATGATTTATTGCCTTCTTCTTTAAGTCAAGTGGATGCTTCAGTGTTACGACAATTACCCGAGGATTT GAAAGCCGCCATTGTTGAGCAGCTTCCTACACACAGGAGGCAAGAGTCTTGCTCCAATGCTGCTGTGCCCCCTCTTAGTGAAATCGGTCAGGCACCATTA GGTATTAAAAGTTCTGAGAATCATTCTGGATCAAGTGGTCACGTTTCGAGTGAAAGTCTATGGGCTGGGAATCCTCCACATTGGATTGATAAGTTTAAAG TTAGCAATTGCTTCATATTAAAGAGGCTTGCAGAAATATATTACAAATCAGGGTTGACTAGCACATTATCTTCAGTTTTGCACAAAATTATATATGAATT TCACGAGCTAGATCTAGCGCATCAGATTTCTGATGAAGCTATTAACATCACGTGTGAGCTACTGAAGCAGTATACCGAAGAGAAGATAGAAAGAGATATT GAAGAGATTTATATCTGTTTTCGGCTTCTGAAAAGGTATGTTAATGTTGCAAGTTGGTATGGTACTCTATTTATATGCTTATTGGTTTTCATAATCATGT CCTTTTCTCCTTGATATCTCCCTACCCAAATTTAACAAGGATCTATTTTGTTTCTTTTTTATTATCCTTGTCCTTAATGGGGCAGTGCTAACTAGAATGG ATTAAAAGCCGGGGTAGTTTGTTGTTAGTATACTTCTTTTGTGTGTCTGTATCATAATCTTTTTTAGGCTCTATATACAGTGAAGCTCAGGTGTTTTCAA GGTATAAATTTATAAATCCTCTTTAAAAACCTGAGATGCATAAATTTTTGAAGGTTTTTTTGTTGAACTTCTAAGAACTTTGTATTATAGTTCGACTTTG ACATTAATGATACAGCTACACAATTCTTAAAGAAAAATGTTGAAGCAGTGGTTATCTTGTCAAAACCATTTTTTTTTGTGGATTATTATATTTGGCCATC CTTG BLAST |
| Tissue | pods |
| Gene name | LI_gene_181475; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_388473
| Blastp | DNA repair protein REV1 from Arabidopsis with 54.7% of identity |
|---|---|
| Blastx | DNA repair protein REV1 from Arabidopsis with 54.64% of identity |
| Eggnog | Poorly processive error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by polIV. Exhibits no 3-5 exonuclease (proofreading) activity. May be involved in translesional synthesis in conjunction with the beta clamp from polIII (By similarity)(COG0389) |
| Kegg | Link to kegg annotations (AT5G44750) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019421546.1) |
| Pfam | BRCA1 C Terminus (BRCT) domain (PF00533.25) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |