Ll_transcript_388478

• Id Trinity: TRINITY_DN50983_c3_g1_i26
• Name Transcript: Ll_transcript_388478
• Sequence: AAGAGGAATGACAACTCAGATACTTATGAATAAGGTTGAAGAAACAATGCAAATTATTATTAATAAGAATAGTATTATAAAGGAGAGGATATGCAGTAAT AATAGTGTGGGATGGAGTGATGAGTGGGAAATAAGAACAAACAGTTGGTAGGCACTAGGCAGGAAGGAAATACTAGAGAGAGCAAATAGCCTTGAGCCTG TTGGCGGCAGATTGATCTATGGAATACTGCAGGAATCAAAATTGAAGAATGGATTAGATATTATTTAGATAGAGAATGGATGAATTAGACATTATGAATG AATAGGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAGAATGATAATACCTTGTTGAGAACCCAGAGTGAATGATGGTAGGTGCGT TGGAAGAGTTCATGAAGAGTAGAAGAATCAACATGACGGTAGTTGACGAAGTTTTCACGAACATACTTCGCATAATAACCTCTTGTTTCCTTTGGTAAAT GCCTCACCAGACGGAGTACCTCTGCATAAGCTCTCACCGCCTTCGACATTTCTACAAAACCCTACAACTAACATCCAATTCATCATTTTCTACAATTTCT ATTGGGCTTTTTGGGCCCTAACCTTTATTCATTTCATTTCAATTTCAAAAATTCCAAAATATCTTAACAAATATTTCATTGTTTTGTTTTGTTTGAAGAA GCAAGTCGAAGAAATGAGTTTAGATTCCTCTCGCTCACCAAATCCTTCTTCTAAAAGAACTTTCTCTGATTTTAATCCTGCTTCTTCCTCATTTAATAAT AATAATAATAAGAAGAGGAAGAAGACGATAAAGGCGAAAACCCTAGACGTCGTTTGGGGCTCTAATTCCCATATTGGCAGTTATATGGCAGACAAGAATC GTAAACTGCAGAACCAATTTCACACTGAAGCTGCTGCTGCTGCTGCTGCTTCCACATCCTCTATCTTCTCTGGAGTTTCCATTTTTGTTGATGGTTTCAC CGTTCCTTCCACCCAGGAGCTGCGAAATTACATGTTAAAGTATGGTGGCAGATTTGAAAACTATTTCTCAAGACATCATGTAACTCATATCATCTGCACT AATCTTCCTCACACTAAACTTAAGAACCTCAGAGCCTTCAGCGCAGGCCTGCCTGTCGTCAAACCCACTTGGATTTTAGACTCAGTTGCAGCTAATAGAC TCTTGAGCTGGGTGCCTTACCAACTTGACCAGCTTGTTAATAACCAGCCAAAACTGTCGTCCTTCTTCACATTGAAAAGTCACAAAATGTCAGAGGATGC TTGTACAAATGCGCTTTCTCAAGCAGTACCAGATGTTGAAGATTTGTCTCTCAGGGTTGGGCAATCAAAGGATACATACTCATCTGAAGTTGGGGAGGTG GTTGAACTTAGCAGGCAACTCAGGTTCAGTTCTGAATCTGATGATATTCTCACAGAGAATAATAATGCAATTACAATGGAAGAGCCTACCACTGTTAGAG TTAGATGTGATGAAGAAGGGATAGCAGAAGGAAGCAATGCTGACACTGGAGATGAGAGAAACGTCCAAGGTGAACTTGACCTTAATCATCAAGAATATTG TATGTCAGTTACTACTCCCTGCTCAGAATCCTCACCTGACCAGAATGTAAAAGAATTGCCAAGTTCTGAAATCTCTAGGCCTTCTAAGCATTTTCATTCA ACTCTGGCAGACCCTAATTTTGTGGAAAATTATTTCAAGAGCTCAAGGCTGCATTTCATTGGGACTTGGAGAAATCGTTATCGAAAGCATTTTCCGGTCT CATCTACTTCGTTTAACAATGAAAATTCTAATATTCACGCCTCTCAGAATCCACTCATCGTCCATGTTGACATGGACTGCTTTTTTGTCTCGGTGGTTAT CAGGAACCACCCTGTATTGTTGGACAAGCCAGTAGCAGTCTGTCACTCAAATAATTCGAAGGGAACTTCTGAGATTTCCTCTGCAAACTACCCTGCTCGT GGTTATGGTATTAGGGCTGGTATGTTTGTTCGAGATGCCAAGGCACTTTGTCCCCACCTTGTTATCTTTCCTTACAACTTTGAAGCTTATGAGGAAGTAG CTGATCAATTTTATAGTATACTACATCGACATTGCAGCAAAGTGCAGGCTGTAAGCTGTGATGAAGCTTTTTTAGATGTCACAGATTCAAAGGTTGAAGA TCCTAAACTTTTTGCTGCAGCAATTAGAAAAGAGATCTATGAGACCACTGGATGTACGGCTAGTGCTGGTATAGCTGGAAATATGCTTATGGCTCGCATT GCCACTAGAACTGCAAAACCAAATGGTCAATATCACATAACTCCAGAAAAAGTTGAATACGAGTTAAGTCAACTCTCAATTAATGCACTTCCTGGAATAG GGCATGTTTTACAGCAGAAATTGAAGAAACAGAAAGTTCACACTTGTGGGCAATTGCAAATGATTTCCAAGGTTGTACTATCTCCTCACTTATTATATAG TTTCTTTGATTTGTTCTGCTATTCTTAAAGTTCAGTTGCTATTTCTTCTAAAATTTGTACTTTCTGCTTTCAGTCTATTATCAGTGTTCTTGTTTTGGTC TCAACTAAAGAGAATACACACTTAGAGGAAAATATTTGATTTGTTGAAATTTTGGAAACAACTTAGAAGTTAGAAGACAATAATCATTGAAAATGAGAAG CTCATTGACGCAATAAAATATAATGCTAGAATATACGGAAAAAACCTTGAAGTGCTTCAAACAATTATATTGCTACTGGGTTGATTTAGAGATCAATGCT TTGTCAATGGACATGATTCATGATAGAGCTTAATGACGTCGTTCGGTCCATTTAACCGACCCAACCTATTGGGACTAAAGTTTGGTTGTTGTAAAAGCTC ATTTACTTGCATACTCTGTAGTTATGTCTCACTTTTATTTTGGGCATCTAGTTGAATAACATTTGTAATTTTCAAGATTCTGTAATTGCTTTCCTGGCGT CTGCAGGCTTCCCTGCAAAAGGATTATGGAGTTAAAACGGGGGAAATGCTGTGGAATTATAGCAGAGGAATTGATAACAGGATGGTTGGGGCCATTCAGG AAAGTAAGTCTATTGGTGCTGATGTAAATTGGGGAGTTAGGTTCAAAGATATGAAAGATGTTGCGGAGTGCAGGGGCGCACTTTCATTATCAAGATCAAA AAGAGAAGAAAAGATGCTGATGAACCTGCAAAGTTTATGGGCTGTGGTGACTGTGAAAATTTGAGTCACTCAATAACGATTCCTCTTGCTACTGATAATG TGGAAGTAATCCAAAGAATAGTAAAGCAGCTTTTTGGATTTTTCTACATAGATGTCAAGGATATTCGGGGTGTTGGCTTGCAGGTTTCAAGACTTGAAAG TGTAAATACTTCTAAGCAAGGTGCAGAAAAGTGTACTTTGAAATCATGGCTTACTTCAGGATCTGCAAGTATGGGAAAACAGAAATATCCTATGGGTAAC AAGCAGAATATAGATGGCATGTCCAGTCATGGATGTAGAGATTTGCAAGGGTCTTCAGTTCTAATAGACAATAACATAGTAAATAACCAAGCTAGTGCAG ACACAATGTTAACAGCACCTCCTTTATGCCAACTAGATGTCGAAGTAATAAAGAATCTACCGCCAGAAGTATTCTCAGAATTAAATGAAATGTATGGAGG AAAGTTAGTTGATTTTGTTGCTAAAGGGAAAGGAACAAATGAGAGTGCTAGATCTGTACGAAATTTGATTATAGAGCAAGAAGGCAAGTTTTTCTATGTT ATATTATTATAGCTGCTTTTACTAATACCCAAAATCATGCAGAAAAAGGCTACTTTTACTCATGATTCATGAATGTTTGGCAATGCCCCATATGCTTTTT AATTGTGTTTCTTAGCAGCTATAAAGAAGGATGCAGAACTTTCCTATTCTGACCGAATTCCTCAAAACAAGTTGTTACCAGAAAACAAGGTAATTTTTTT ACTTCATTCTTTACTCAAATACAGTGAAATATAGTCTAATATCACTAAATTACCCTTTTCTGATTTCATTAGTATTTGTTTCTCATAAATCTAACTTCTT CAACAATTCGATATATATATTACTTTATTAGCATATTTATTAAATTAATTAGAATAATTGAACTTGATGTTTTATTATTATTTGAGTTTGAACTTGTTAT TTGAGTTTCTTTTAGATTATTTAAACTTTGATAGATTTGACTTAGTATGAGATTGTTGCAGTGTCTGAACTTTATATTTAGATTTATTTAATTTGATAAT ATTTAATTTTCAATATTATTGGATTTTTATTTTTTTTTATTTTTTTTATAAACCGTGGATAACGGGGATAAATTTTTCCTTGAAGCGGAGAGCGTGCAAG AAAATTAGTGGTAGGGATGGGGAGCGGGGGGAGTATTCCCTGCTCCTGCACCACTCCATCAGGGGAGTACTCCCTGCTCCCGCACTGGTCCATTGCTATC CCTATTTGTTTTAAACAATTACTTTTTTCTGCTTGCTTTTGCCTAGCGTTCATTAAAATCTTCGCTTAATTTTTGTTAGGTTTTGACTCAGTTAGATCTG GCTTTTTTGTCTCATTTTAATATTTTATAACATGCCAATTTTAACTAAAAACATTCATATGCCAATTATATTTTATTATTTTGCTTTGGTTAATTCTAAT GGTTTAATTCTTTCATTAACCTGATCTAACAGGTCAGTATCCGAGTGTGTAGGTTATATGCTTGATTCAAATTGTTCTTACTCTAGCTTCTTTAATTAAG ATTGTTCAGTTTGAAGTTTTAATAGGTTGAAAAGCACTTTAATATCTGAGTTTGAAGTTTTAATAGTTTTAATTTAGCAGTGCCATATCCACTCCTTCAG TCCTTTGTGGAAAGGAAGGCTTCCATGTACAGTCAATTAAATTATAATCTCCTTTCGGTAGCTACTTTTATTTTTAGTAGCTTATTGGTTATTGCTATTG ATACTGGAGTTACAATATCTAGAAATCAATGAAACATTATTTTGTTTGCTTTTATTTGTATTTATTTTTCTACTTTTCAAAGAATAGCGTGTTTAGTTAC ATATATCATGATTAAATCCGAGGTAGTGCAGAAAGAAGCAGAGGTAGTTGAAGTAGGACCAGGCTCAAGGGATGGATCCTATGTCAAGGTTACTCACATT TCAAGTTTTGAGAAAGATGATTTATTGCCTTCTTCTTTAAGTCAAGTGGATGCTTCAGTGTTACGACAATTACCCGAGGATTTGAAAGCCGCCATTGTTG AGCAGCTTCCTACACACAGGAGGCAAGAGTCTTGCTCCAATGCTGCTGTGCCCCCTCTTAGTGAAATCGGTCAGGCACCATTAGGTATTAAAAGTTCTGA GAATCATTCTGGATCAAGTGGTCACGTTTCGAGTGAAAGTCTATGGGCTGGGAATCCTCCACATTGGATTGATAAGTTTAAAGTTAGCAATTGCTTCATA TTAAAGAGGCTTGCAGAAATATATTACAAATCAGGGTTGACTAGCACATTATCTTCAGTTTTGCACAAAATTATATATGAATTTCACGAGCTAGATCTAG CGCATCAGATTTCTGATGAAGCTATTAACATCACGTGTGAGCTACTGAAGCAGTATACCGAAGAGAAGATAGAAAGAGATATTGAAGAGATTTATATCTG TTTTCGGCTTCTGAAAAGGTTTGCAGCAAAGTCACAATTTTTCCTACAAGTGTACAATACTCTATTTCCGCACCTCCAGGCAGCTGTTGATGACGCCTAT GGAGGGACCTTGTTTATACCATCATAGTAGCATGCAAATAGTCAAAATCTCATCTAATGTGAGCAACTCAAGAAAAAGTCACCAGTTTAGCTGTATAATC TGGACAGATCACAAACCAATGGTTTCAATCCACTATGACATCCTGCAGAGTATGTTTGACTTTACCATGATAGCTAAACTTTTTCTGCAGCAAATTTGCT TGTTCTGGTGGATGTTGTATTTAATTTCTAGTGATATTTTTTCAATTTTATGCTTCATAGTGTCTGTTTTCAAAATTACCATTTTGTTCTGAAATTGTAA GATCCTTTTGTGAGTTTCGTCACTCCTTGGTCCTGCAAGACCTTTTGTCTGATGTAAATCCTCATGTTAGTCTTTTCACCAGCATTAGTATTTTAATATG CCTTTGTGGCTGTGCAATTAATGTATAACTTCTTTATAGTTCATTTCATCCTTTTCATGATCTCTATGTAATTATAAAATTCCTCCATATTCTCAA
• Tissue: pods
• Gene name: LI_gene_181475;
• Additional information: details;

Expression of Ll_transcript_388478

FPKM

• PAB: 0
• PNAB: 0.2
• PS1: 0.2
• PS2: 0.2
• PS3: 0.2
• PW1: 0
• PW2: 0.3
• PW3: 0

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_388478

• Blastp: DNA repair protein REV1 from Arabidopsis with 54.56% of identity
• Blastx: DNA repair protein REV1 from Arabidopsis with 54.72% of identity
• Eggnog: Poorly processive error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by polIV. Exhibits no 3-5 exonuclease (proofreading) activity. May be involved in translesional synthesis in conjunction with the beta clamp from polIII (By similarity)(COG0389)
• Kegg: Link to kegg annotations (AT5G44750)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019421546.1)
• Pfam: BRCA1 C Terminus (BRCT) domain (PF00533.25)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;