| Id Trinity | TRINITY_DN50983_c3_g1_i29 |
|---|---|
| Name Transcript | Ll_transcript_388482 |
| Sequence | AAGAGGAATGACAACTCAGATACTTATGAATAAGGTTGAAGAAACAATGCAAATTATTATTAATAAGAATAGTATTATAAAGGAGAGGATATGCAGTAAT AATAGTGTGGGATGGAGTGATGAGTGGGAAATAAGAACAAACAGTTGGTAGGCACTAGGCAGGAAGGAAATACTAGAGAGAGCAAATAGCCTTGAGCCTG TTGGCGGCAGATTGATCTATGGAATACTGCAGGAATCAAAATTGAAGAATGGATTAGATATTATTTAGATAGAGAATGGATGAATTAGACATTATGAATG AATAGGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAGAATGATAATACCTTGTTGAGAACCCAGAGTGAATGATGGTAGGTGCGT TGGAAGAGTTCATGAAGAGTAGAAGAATCAACATGACGGTAGTTGACGAAGTTTTCACGAACATACTTCGCATAATAACCTCTTGTTTCCTTTGGTAAAT GCCTCACCAGACGGAGTACCTCTGCATAAGCTCTCACCGCCTTCGACATTTCTACAAAACCCTACAACTAACATCCAATTCATCATTTTCTACAATTTCT ATTGGGCTTTTTGGGCCCTAACCTTTATTCATTTCATTTCAATTTCAAAAATTCCAAAATATCTTAACAAATATTTCATTGTTTTGTTTTGTTTGAAGAA GCAAGTCGAAGAAATGAGTTTAGATTCCTCTCGCTCACCAAATCCTTCTTCTAAAAGAACTTTCTCTGATTTTAATCCTGCTTCTTCCTCATTTAATAAT AATAATAATAAGAAGAGGAAGAAGACGATAAAGGCGAAAACCCTAGACGTCGTTTGGGGCTCTAATTCCCATATTGGCAGTTATATGGCAGACAAGAATC GTAAACTGCAGAACCAATTTCACACTGAAGCTGCTGCTGCTGCTGCTGCTTCCACATCCTCTATCTTCTCTGGAGTTTCCATTTTTGTTGATGGTTTCAC CGTTCCTTCCACCCAGGAGCTGCGAAATTACATGTTAAAGTATGGTGGCAGATTTGAAAACTATTTCTCAAGACATCATGTAACTCATATCATCTGCACT AATCTTCCTCACACTAAACTTAAGAACCTCAGAGCCTTCAGCGCAGGCCTGCCTGTCGTCAAACCCACTTGGATTTTAGACTCAGTTGCAGCTAATAGAC TCTTGAGCTGGGTGCCTTACCAACTTGACCAGCTTGTTAATAACCAGCCAAAACTGTCGTCCTTCTTCACATTGAAAAGTCACAAAATGTCAGAGGATGC TTGTACAAATGCGCTTTCTCAAGCAGTACCAGATGTTGAAGATTTGTCTCTCAGGGTTGGGCAATCAAAGGATACATACTCATCTGAAGTTGGGGAGGTG GTTGAACTTAGCAGGCAACTCAGGTTCAGTTCTGAATCTGATGATATTCTCACAGAGAATAATAATGCAATTACAATGGAAGAGCCTACCACTGTTAGAG TTAGATGTGATGAAGAAGGGATAGCAGAAGGAAGCAATGCTGACACTGGAGATGAGAGAAACGTCCAAGGTGAACTTGACCTTAATCATCAAGAATATTG TATGTCAGTTACTACTCCCTGCTCAGAATCCTCACCTGACCAGAATGTAAAAGAATTGCCAAGTTCTGAAATCTCTAGGCCTTCTAAGCATTTTCATTCA ACTCTGGCAGACCCTAATTTTGTGGAAAATTATTTCAAGAGCTCAAGGCTGCATTTCATTGGGACTTGGAGAAATCGTTATCGAAAGCATTTTCCGGTCT CATCTACTTCGTTTAACAATGAAAATTCTAATATTCACGCCTCTCAGAATCCACTCATCGTCCATGTTGACATGGACTGCTTTTTTGTCTCGGTGGTTAT CAGGAACCACCCTGTATTGTTGGACAAGCCAGTAGCAGTCTGTCACTCAAATAATTCGAAGGGAACTTCTGAGATTTCCTCTGCAAACTACCCTGCTCGT GGTTATGGTATTAGGGCTGGTATGTTTGTTCGAGATGCCAAGGCACTTTGTCCCCACCTTGTTATCTTTCCTTACAACTTTGAAGCTTATGAGGAAGTAG CTGATCAATTTTATAGTATACTACATCGACATTGCAGCAAAGTGCAGGCTGTAAGCTGTGATGAAGCTTTTTTAGATGTCACAGATTCAAAGGTTGAAGA TCCTAAACTTTTTGCTGCAGCAATTAGAAAAGAGATCTATGAGACCACTGGATGTACGGCTAGTGCTGGTATAGCTGGAAATATGCTTATGGCTCGCATT GCCACTAGAACTGCAAAACCAAATGGTCAATATCACATAACTCCAGAAAAAGTTGAATACGAGTTAAGTCAACTCTCAATTAATGCACTTCCTGGAATAG GGCATGTTTTACAGCAGAAATTGAAGAAACAGAAAGTTCACACTTGTGGGCAATTGCAAATGATTTCCAAGGTTGTACTATCTCCTCACTTATTATATAG TTTCTTTGATTTGTTCTGCTATTCTTAAAGTTCAGTTGCTATTTCTTCTAAAATTTGTACTTTCTGCTTTCAGTCTATTATCAGTGTTCTTGTTTTGGTC TCAACTAAAGAGAATACACACTTAGAGGAAAATATTTGATTTGTTGAAATTTTGGAAACAACTTAGAAGTTAGAAGACAATAATCATTGAAAATGAGAAG CTCATTGACGCAATAAAATATAATGCTAGAATATACGGAAAAAACCTTGAAGTGCTTCAAACAATTATATTGCTACTGGGTTGATTTAGAGATCAATGCT TTGTCAATGGACATGATTCATGATAGAGCTTAATGACGTCGTTCGGTCCATTTAACCGACCCAACCTATTGGGACTAAAGTTTGGTTGTTGTAAAAGCTC ATTTACTTGCATACTCTGTAGTTATGTCTCACTTTTATTTTGGGCATCTAGTTGAATAACATTTGTAATTTTCAAGATTCTGTAATTGCTTTCCTGGCGT CTGCAGGCTTCCCTGCAAAAGGATTATGGAGTTAAAACGGGGGAAATGCTGTGGAATTATAGCAGAGGAATTGATAACAGGATGGTTGGGGCCATTCAGG AAAGTAAGTCTATTGGTGCTGATGTAAATTGGGGAGTTAGGTTCAAAGATATGAAAGATGTTGGTATTTTTATACACTGTATCTTTTATTTTAACTTTCA AATTTCAATCTTACAAAATACTGTATCATTGAAAATGCTCATATAAAAGTTATTCCAGTGTGATCACTTCCTAATTAACCTCAGTAAGGAAGTTTCTTTG CGATTGCAAGGTTGCGGAGTGCAGGGGCGCACTTTCATTATCAAGATCAAAAAGAGAAGAAAAGATGCTGATGAACCTGCAAAGTTTATGGGCTGTGGTG ACTGTGAAAATTTGAGTCACTCAATAACGATTCCTCTTGCTACTGATAATGTGGAAGTAATCCAAAGAATAGTAAAGCAGCTTTTTGGATTTTTCTACAT AGATGTCAAGGATATTCGGGGTGTTGGCTTGCAGGTTTCAAGACTTGAAAGTGTAAATACTTCTAAGCAAGGTGCAGAAAAGTGTACTTTGAAATCATGG CTTACTTCAGGATCTGCAAGTATGGGAAAACAGAAATATCCTATGGGTAACAAGCAGAATATAGATGGCATGTCCAGTCATGGATGTAGAGATTTGCAAG GGTCTTCAGTTCTAATAGACAATAACATAGTAAATAACCAAGCTAGTGCAGACACAATGTTAACAGCACCTCCTTTATGCCAACTAGATGTCGAAGTAAT AAAGAATCTACCGCCAGAAGTATTCTCAGAATTAAATGAAATGTATGGAGGAAAGTTAGTTGATTTTGTTGCTAAAGGGAAAGGAACAAATGAGAGTGCT AGATCTGTACGAAATTTGATTATAGAGCAAGAAGGCAAGTTTTTCTATGTTATATTATTATAGCTGCTTTTACTAATACCCAAAATCATGCAGAAAAAGG CTACTTTTACTCATGATTCATGAATGTTTGGCAATGCCCCATATGCTTTTTAATTGTGTTTCTTAGCAGCTATAAAGAAGGATGCAGAACTTTCCTATTC TGACCGAATTCCTCAAAACAAGTTGTTACCAGAAAACAAGGTAATTTTTTTACTTCATTCTTTACTCAAATACAGTGAAATATAGTCTAATATCACTAAA TTACCCTTTTCTGATTTCATTAGTATTTGTTTCTCATAAATCTAACTTCTTCAACAATTCGATATATATATTACTTTATTAGCATATTTATTAAATTAAT TAGAATAATTGAACTTGATGTTTTATTATTATTTGAGTTTGAACTTGTTATTTGAGTTTCTTTTAGATTATTTAAACTTTGATAGATTTGACTTAGTATG AGATTGTTGCAGTGTCTGAACTTTATATTTAGATTTATTTAATTTGATAATATTTAATTTTCAATATTATTGGATTTTTATTTTTTTTTATTTTTTTTAT AAACCGTGGATAACGGGGATAAATTTTTCCTTGAAGCGGAGAGCGTGCAAGAAAATTAGTGGTAGGGATGGGGAGCGGGGGGAGTATTCCCTGCTCCTGC ACCACTCCATCAGGGGAGTACTCCCTGCTCCCGCACTGGTCCATTGCTATCCCTATTTGTTTTAAACAATTACTTTTTTCTGCTTGCTTTTGCCTAGCGT TCATTAAAATCTTCGCTTAATTTTTGTTAGGTTTTGACTCAGTTAGATCTGGCTTTTTTGTCTCATTTTAATATTTTATAACATGCCAATTTTAACTAAA AACATTCATATGCCAATTATATTTTATTATTTTGCTTTGGTTAATTCTAATGGTTTAATTCTTTCATTAACCTGATCTAACAGGTCAGTATCCGAGTGTG TAGGTTATATGCTTGATTCAAATTGTTCTTACTCTAGCTTCTTTAATTAAGATTGTTCAGTTTGAAGTTTTAATAGGTTGAAAAGCACTTTAATATCTGA GTTTGAAGTTTTAATAGTTTTAATTTAGCAGTGCCATATCCACTCCTTCAGTCCTTTGTGGAAAGGAAGGCTTCCATGTACAGTCAATTAAATTATAATC TCCTTTCGGTAGCTACTTTTATTTTTAGTAGCTTATTGGTTATTGCTATTGATACTGGAGTTACAATATCTAGAAATCAATGAAACATTATTTTGTTTGC TTTTATTTGTATTTATTTTTCTACTTTTCAAAGAATAGCGTGTTTAGTTACATATATCATGATTAAATCCGAGGTAGTGCAGAAAGAAGCAGAGGTAGTT GAAGTAGGACCAGGCTCAAGGGATGGATCCTATGTCAAGGTTACTCACATTTCAAGTTTTGAGAAAGATGATTTATTGCCTTCTTCTTTAAGTCAAGTGG ATGCTTCAGTGTTACGACAATTACCCGAGGATTTGAAAGCCGCCATTGTTGAGCAGCTTCCTACACACAGGAGGCAAGAGTCTTGCTCCAATGCTGCTGT GCCCCCTCTTAGTGAAATCGGTCAGGCACCATTAGGTATTAAAAGTTCTGAGAATCATTCTGGATCAAGTGGTCACGTTTCGAGTGAAAGTCTATGGGCT GGGAATCCTCCACATTGGATTGATAAGTTTAAAGTTAGCAATTGCTTCATATTAAAGAGGCTTGCAGAAATATATTACAAATCAGGGTTGACTAGCACAT TATCTTCAGTTTTGCACAAAATTATATATGAATTTCACGAGCTAGATCTAGCGCATCAGATTTCTGATGAAGCTATTAACATCACGTGTGAGCTACTGAA GCAGTATACCGAAGAGAAGATAGAAAGAGATATTGAAGAGATTTATATCTGTTTTCGGCTTCTGAAAAGGTTTGCAGCAAAGTCACAATTTTTCCTACAA GTGTACAATACTCTATTTCCGCACCTCCAGGCAGCTGTTGATGACGCCTATGGAGGGACCTTGTTTATACCATCATAGTAGCATGCAAATAGTCAAAATC TCATCTAATGTGAGCAACTCAAGAAAAAGTCACCAGTTTAGCTGTATAATCTGGACAGATCACAAACCAATGGTTTCAATCCACTATGACATCCTGCAGA GTATGTTTGACTTTACCATGATAGCTAAACTTTTTCTGCAGCAAATTTGCTTGTTCTGGTGGATGTTGTATTTAATTTCTAGTGATATTTTTTCAATTTT ATGCTTCATAGTGTCTGTTTTCAAAATTACCATTTTGTTCTGAAATTGTAAGATCCTTTTGTGAGTTTCGTCACTCCTTGGTCCTGCAAGACCTTTTGTC TGATGTAAATCCTCATGTTAGTCTTTTCACCAGCATTAGTATTTTAATATGCCTTTGTGGCTGTGCAATTAATGTATAACTTCTTTATAGTTCATTTCAT CCTTTTCATGATCTCTATGTAATTATAAAATTCCTCCATATTCTCAA BLAST |
| Tissue | pods |
| Gene name | LI_gene_181475; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_388482
| Blastp | DNA repair protein REV1 from Arabidopsis with 54.56% of identity |
|---|---|
| Blastx | DNA repair protein REV1 from Arabidopsis with 54.72% of identity |
| Eggnog | Poorly processive error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by polIV. Exhibits no 3-5 exonuclease (proofreading) activity. May be involved in translesional synthesis in conjunction with the beta clamp from polIII (By similarity)(COG0389) |
| Kegg | Link to kegg annotations (AT5G44750) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019421546.1) |
| Pfam | BRCA1 C Terminus (BRCT) domain (PF00533.25) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |