| Id Trinity | TRINITY_DN50983_c3_g1_i30 |
|---|---|
| Name Transcript | Ll_transcript_388483 |
| Sequence | CTTACATTATTAAATGATTATTATTAAATAATATATTAATAATGAACACTGAGATGATGTATACTTTTATCATGTGAGAGATGATGAACATTAAGAAGGC GATGTGTTTTAGGAGGTAAATAGAAAATAGAAAATAATTGGTCATGTTATCACATGTGTGAGGGTGTATAAGAAGGGGTGAGAAATTTTTGGAGGGAAAA TAAAGTGATGAGGAGGTGAGCTTTTTTTCTTATATAGTAATAGATTAATCATATTTTCATTCAGCTTTTTCCGTTGATTATTAGAGTAATCCCTTAAAGT CATAATATAAAAAGTGGACATTATTGTAAAAAAGTGTAACAAGAGAAATGATCTTGTGGCAGTGTCCTAGATTTTTGTTTACTCCATTCTTTTTGGTCCA AAAATTGAATTCCGTTGTCTTTTCCAAGTAAGTATGACATGTTATGTAGCAGAAGAAGCTACAAAAACAAGTTGAAACAAAGGCAATGCTCATTATTTCA TAAAGAAGACAAACAAAATGGGCACCCCACTTTTCTGTCCACTATCAATCTCTTTCCACTGCATCAAAAATTTACCATTTTCATCCACACACACCATATA TATGATCATATATTACCCCACAAACAATAAAGTTTCATTTTTTACCAATTACCACTTACCACATGAATGAATGAATGAATGAATGAATGAGAATGATAAT ACCTTGTTGAGAACCCAGAGTGAATGATGGTAGGTGCGTTGGAAGAGTTCATGAAGAGTAGAAGAATCAACATGACGGTAGTTGACGAAGTTTTCACGAA CATACTTCGCATAATAACCTCTTGTTTCCTTTGGTAAATGCCTCACCAGACGGAGTACCTCTGCATAAGCTCTCACCGCCTTCGACATTTCTACAAAACC CTACAACTAACATCCAATTCATCATTTTCTACAATTTCTATTGGGCTTTTTGGGCCCTAACCTTTATTCATTTCATTTCAATTTCAAAAATTCCAAAATA TCTTAACAAATATTTCATTGTTTTGTTTTGTTTGAAGAAGCAAGTCGAAGAAATGAGTTTAGATTCCTCTCGCTCACCAAATCCTTCTTCTAAAAGAACT TTCTCTGATTTTAATCCTGCTTCTTCCTCATTTAATAATAATAATAATAAGAAGAGGAAGAAGACGATAAAGGCGAAAACCCTAGACGTCGTTTGGGGCT CTAATTCCCATATTGGCAGTTATATGGCAGACAAGAATCGTAAACTGCAGAACCAATTTCACACTGAAGCTGCTGCTGCTGCTGCTGCTTCCACATCCTC TATCTTCTCTGGAGTTTCCATTTTTGTTGATGGTTTCACCGTTCCTTCCACCCAGGAGCTGCGAAATTACATGTTAAAGTATGGTGGCAGATTTGAAAAC TATTTCTCAAGACATCATGTAACTCATATCATCTGCACTAATCTTCCTCACACTAAACTTAAGAACCTCAGAGCCTTCAGCGCAGGCCTGCCTGTCGTCA AACCCACTTGGATTTTAGACTCAGTTGCAGCTAATAGACTCTTGAGCTGGGTGCCTTACCAACTTGACCAGCTTGTTAATAACCAGCCAAAACTGTCGTC CTTCTTCACATTGAAAAGTCACAAAATGTCAGAGGATGCTTGTACAAATGCGCTTTCTCAAGCAGTACCAGATGTTGAAGATTTGTCTCTCAGGGTTGGG CAATCAAAGGATACATACTCATCTGAAGTTGGGGAGGTGGTTGAACTTAGCAGGCAACTCAGGTTCAGTTCTGAATCTGATGATATTCTCACAGAGAATA ATAATGCAATTACAATGGAAGAGCCTACCACTGTTAGAGTTAGATGTGATGAAGAAGGGATAGCAGAAGGAAGCAATGCTGACACTGGAGATGAGAGAAA CGTCCAAGGTGAACTTGACCTTAATCATCAAGAATATTGTATGTCAGTTACTACTCCCTGCTCAGAATCCTCACCTGACCAGAATGTAAAAGAATTGCCA AGTTCTGAAATCTCTAGGCCTTCTAAGCATTTTCATTCAACTCTGGCAGACCCTAATTTTGTGGAAAATTATTTCAAGAGCTCAAGGCTGCATTTCATTG GGACTTGGAGAAATCGTTATCGAAAGCATTTTCCGGTCTCATCTACTTCGTTTAACAATGAAAATTCTAATATTCACGCCTCTCAGAATCCACTCATCGT CCATGTTGACATGGACTGCTTTTTTGTCTCGGTGGTTATCAGGAACCACCCTGTATTGTTGGACAAGCCAGTAGCAGTCTGTCACTCAAATAATTCGAAG GGAACTTCTGAGATTTCCTCTGCAAACTACCCTGCTCGTGGTTATGGTATTAGGGCTGGTATGTTTGTTCGAGATGCCAAGGCACTTTGTCCCCACCTTG TTATCTTTCCTTACAACTTTGAAGCTTATGAGGAAGTAGCTGATCAATTTTATAGTATACTACATCGACATTGCAGCAAAGTGCAGGCTGTAAGCTGTGA TGAAGCTTTTTTAGATGTCACAGATTCAAAGGTTGAAGATCCTAAACTTTTTGCTGCAGCAATTAGAAAAGAGATCTATGAGACCACTGGATGTACGGCT AGTGCTGGTATAGCTGGAAATATGCTTATGGCTCGCATTGCCACTAGAACTGCAAAACCAAATGGTCAATATCACATAACTCCAGAAAAAGTTGAATACG AGTTAAGTCAACTCTCAATTAATGCACTTCCTGGAATAGGGCATGTTTTACAGCAGAAATTGAAGAAACAGAAAGTTCACACTTGTGGGCAATTGCAAAT GATTTCCAAGGCTTCCCTGCAAAAGGATTATGGAGTTAAAACGGGGGAAATGCTGTGGAATTATAGCAGAGGAATTGATAACAGGATGGTTGGGGCCATT CAGGAAAGTAAGTCTATTGGTGCTGATGTAAATTGGGGAGTTAGGTTCAAAGATATGAAAGATTGTGATCACTTCCTAATTAACCTCAGTAAGGAAGTTT CTTTGCGATTGCAAGGTTGCGGAGTGCAGGGGCGCACTTTCATTATCAAGATCAAAAAGAGAAGAAAAGATGCTGATGAACCTGCAAAGTTTATGGGCTG TGGTGACTGTGAAAATTTGAGTCACTCAATAACGATTCCTCTTGCTACTGATAATGTGGAAGTAATCCAAAGAATAGTAAAGCAGCTTTTTGGATTTTTC TACATAGATGTCAAGGATATTCGGGGTGTTGGCTTGCAGGTTTCAAGACTTGAAAGTGTAAATACTTCTAAGCAAGGTGCAGAAAAGTGTACTTTGAAAT CATGGCTTACTTCAGGATCTGCAAGTATGGGAAAACAGAAATATCCTATGGGTAACAAGCAGAATATAGATGGCATGTCCAGTCATGGATGTAGAGATTT GCAAGGGTCTTCAGTTCTAATAGACAATAACATAGTAAATAACCAAGCTAGTGCAGACACAATGTTAACAGCACCTCCTTTATGCCAACTAGATGTCGAA GTAATAAAGAATCTACCGCCAGAAGTATTCTCAGAATTAAATGAAATGTATGGAGGAAAGTTAGTTGATTTTGTTGCTAAAGGGAAAGGAACAAATGAGA GTGCTAGATCTGTACGAAATTTGATTATAGAGCAAGAAGGCAAGTTTTTCTATGTTATATTATTATAGCTGCTTTTACTAATACCCAAAATCATGCAGAA AAAGGCTACTTTTACTCATGATTCATGAATGTTTGGCAATGCCCCATATGCTTTTTAATTGTGTTTCTTAGCAGCTATAAAGAAGGATGCAGAACTTTCC TATTCTGACCGAATTCCTCAAAACAAGTTGTTACCAGAAAACAAGGTAATTTTTTTACTTCATTCTTTACTCAAATACAGTGAAATATAGTCTAATATCA CTAAATTACCCTTTTCTGATTTCATTAGTATTTGTTTCTCATAAATCTAACTTCTTCAACAATTCGATATATATATTACTTTATTAGCATATTTATTAAA TTAATTAGAATAATTGAACTTGATGTTTTATTATTATTTGAGTTTGAACTTGTTATTTGAGTTTCTTTTAGATTATTTAAACTTTGATAGATTTGACTTA GTATGAGATTGTTGCAGTGTCTGAACTTTATATTTAGATTTATTTAATTTGATAATATTTAATTTTCAATATTATTGGATTTTTATTTTTTTTTATTTTT TTTATAAACCGTGGATAACGGGGATAAATTTTTCCTTGAAGCGGAGAGCGTGCAAGAAAATTAGTGGTAGGGATGGGGAGCGGGGGGAGTATTCCCTGCT CCTGCACCACTCCATCAGGGGAGTACTCCCTGCTCCCGCACTGGTCCATTGCTATCCCTATTTGTTTTAAACAATTACTTTTTTCTGCTTGCTTTTGCCT AGCGTTCATTAAAATCTTCGCTTAATTTTTGTTAGGTTTTGACTCAGTTAGATCTGGCTTTTTTGTCTCATTTTAATATTTTATAACATGCCAATTTTAA CTAAAAACATTCATATGCCAATTATATTTTATTATTTTGCTTTGGTTAATTCTAATGGTTTAATTCTTTCATTAACCTGATCTAACAGGTCAGTATCCGA GTGTGTAGGTTATATGCTTGATTCAAATTGTTCTTACTCTAGCTTCTTTAATTAAGATTGTTCAGTTTGAAGTTTTAATAGGTTGAAAAGCACTTTAATA TCTGAGTTTGAAGTTTTAATAGTTTTAATTTAGCAGTGCCATATCCACTCCTTCAGTCCTTTGTGGAAAGGAAGGCTTCCATGTACAGTCAATTAAATTA TAATCTCCTTTCGGTAGCTACTTTTATTTTTAGTAGCTTATTGGTTATTGCTATTGATACTGGAGTTACAATATCTAGAAATCAATGAAACATTATTTTG TTTGCTTTTATTTGTATTTATTTTTCTACTTTTCAAAGAATAGCGTGTTTAGTTACATATATCATGATTAAATCCGAGGTAGTGCAGAAAGAAGCAGAGG TAGTTGAAGTAGGACCAGGCTCAAGGGATGGATCCTATGTCAAGGTTACTCACATTTCAAGTTTTGAGAAAGATGATTTATTGCCTTCTTCTTTAAGTCA AGTGGATGCTTCAGTGTTACGACAATTACCCGAGGATTTGAAAGCCGCCATTGTTGAGCAGCTTCCTACACACAGGAGGCAAGAGTCTTGCTCCAATGCT GCTGTGCCCCCTCTTAGTGAAATCGGTCAGGCACCATTAGGTATTAAAAGTTCTGAGAATCATTCTGGATCAAGTGGTCACGTTTCGAGTGAAAGTCTAT GGGCTGGGAATCCTCCACATTGGATTGATAAGTTTAAAGTTAGCAATTGCTTCATATTAAAGAGGCTTGCAGAAATATATTACAAATCAGGGTTGACTAG CACATTATCTTCAGTTTTGCACAAAATTATATATGAATTTCACGAGCTAGATCTAGCGCATCAGATTTCTGATGAAGCTATTAACATCACGTGTGAGCTA CTGAAGCAGTATACCGAAGAGAAGATAGAAAGAGATATTGAAGAGATTTATATCTGTTTTCGGCTTCTGAAAAGGTTTGCAGCAAAGTCACAATTTTTCC TACAAGTGTACAATACTCTATTTCCGCACCTCCAGGCAGCTGTTGATGACGCCTATGGAGGGACCTTGTTTATACCATCATAGTAGCATGCAAATAGTCA AAATCTCATCTAATGTGAGCAACTCAAGAAAAAGTCACCAGTTTAGCTGTATAATCTGGACAGATCACAAACCAATGGTTTCAATCCACTATGACATCCT GCAGAGTATGTTTGACTTTACCATGATAGCTAAACTTTTTCTGCAGCAAATTTGCTTGTTCTGGTGGATGTTGTATTTAATTTCTAGTGATATTTTTTCA ATTTTATGCTTCATAGTGTCTGTTTTCAAAATTACCATTTTGTTCTGAAATTGTAAGATCCTTTTGTGAGTTTCGTCACTCCTTGGTCCTGCAAGACCTT TTGTCTGATGTAAATCCTCATGTTAGTCTTTTCACCAGCATTAGTATTTTAATATGCCTTTGTGGCTGTGCAATTAATGTATAACTTCTTTATAGTTCAT TTCATCCTTTTCATGATCTCTATGTAATTATAAAATTCCTCCATATTCTCAA BLAST |
| Tissue | pods |
| Gene name | LI_gene_181475; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_388483
| Blastp | DNA repair protein REV1 from Arabidopsis with 54.7% of identity |
|---|---|
| Blastx | DNA repair protein REV1 from Arabidopsis with 54.64% of identity |
| Eggnog | Poorly processive error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by polIV. Exhibits no 3-5 exonuclease (proofreading) activity. May be involved in translesional synthesis in conjunction with the beta clamp from polIII (By similarity)(COG0389) |
| Kegg | Link to kegg annotations (AT5G44750) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019421546.1) |
| Pfam | BRCA1 C Terminus (BRCT) domain (PF00533.25) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |