| Id Trinity | TRINITY_DN50983_c3_g1_i6 |
|---|---|
| Name Transcript | Ll_transcript_388451 |
| Sequence | CTTACATTATTAAATGATTATTATTAAATAATATATTAATAATGAACACTGAGATGATGTATACTTTTATCATGTGAGAGATGATGAACATTAAGAAGGC GATGTGTTTTAGGAGGTAAATAGAAAATAGAAAATAATTGGTCATGTTATCACATGTGTGAGGGTGTATAAGAAGGGGTGAGAAATTTTTGGAGGGAAAA TAAAGTGATGAGGAGGTGAGCTTTTTTTCTTATATAGTAATAGATTAATCATATTTTCATTCAGCTTTTTCCGTTGATTATTAGAGTAATCCCTTAAAGT CATAATATAAAAAGTGGACATTATTGTAAAAAAGTGTAACAAGAGAAATGATCTTGTGGCAGTGTCCTAGATTTTTGTTTACTCCATTCTTTTTGGTCCA AAAATTGAATTCCGTTGTCTTTTCCAAGTAAGTATGACATGTTATGTAGCAGAAGAAGCTACAAAAACAAGTTGAAACAAAGGCAATGCTCATTATTTCA TAAAGAAGACAAACAAAATGGGCACCCCACTTTTCTGTCCACTATCAATCTCTTTCCACTGCATCAAAAATTTACCATTTTCATCCACACACACCATATA TATGATCATATATTACCCCACAAACAATAAAGTTTCATTTTTTACCAATTACCACTTACCACATGAATGAATGAATGAATGAATGAATGAGAATGATAAT ACCTTGTTGAGAACCCAGAGTGAATGATGGTAGGTGCGTTGGAAGAGTTCATGAAGAGTAGAAGAATCAACATGACGGTAGTTGACGAAGTTTTCACGAA CATACTTCGCATAATAACCTCTTGTTTCCTTTGGTAAATGCCTCACCAGACGGAGTACCTCTGCATAAGCTCTCACCGCCTTCGACATTTCTACAAAACC CTACAACTAACATCCAATTCATCATTTTCTACAATTTCTATTGGGCTTTTTGGGCCCTAACCTTTATTCATTTCATTTCAATTTCAAAAATTCCAAAATA TCTTAACAAATATTTCATTGTTTTGTTTTGTTTGAAGAAGCAAGTCGAAGAAATGAGTTTAGATTCCTCTCGCTCACCAAATCCTTCTTCTAAAAGAACT TTCTCTGATTTTAATCCTGCTTCTTCCTCATTTAATAATAATAATAATAAGAAGAGGAAGAAGACGATAAAGGCGAAAACCCTAGACGTCGTTTGGGGCT CTAATTCCCATATTGGCAGTTATATGGCAGACAAGAATCGTAAACTGCAGAACCAATTTCACACTGAAGCTGCTGCTGCTGCTGCTGCTTCCACATCCTC TATCTTCTCTGGAGTTTCCATTTTTGTTGATGGTTTCACCGTTCCTTCCACCCAGGAGCTGCGAAATTACATGTTAAAGTATGGTGGCAGATTTGAAAAC TATTTCTCAAGACATCATGTAACTCATATCATCTGCACTAATCTTCCTCACACTAAACTTAAGAACCTCAGAGCCTTCAGCGCAGGCCTGCCTGTCGTCA AACCCACTTGGATTTTAGACTCAGTTGCAGCTAATAGACTCTTGAGCTGGGTGCCTTACCAACTTGACCAGCTTGTTAATAACCAGCCAAAACTGTCGTC CTTCTTCACATTGAAAAGTCACAAAATGTCAGAGGATGCTTGTACAAATGCGCTTTCTCAAGCAGTACCAGATGTTGAAGATTTGTCTCTCAGGGTTGGG CAATCAAAGGATACATACTCATCTGAAGTTGGGGAGGTGGTTGAACTTAGCAGGCAACTCAGGTTCAGTTCTGAATCTGATGATATTCTCACAGAGAATA ATAATGCAATTACAATGGAAGAGCCTACCACTGTTAGAGTTAGATGTGATGAAGAAGGGATAGCAGAAGGAAGCAATGCTGACACTGGAGATGAGAGAAA CGTCCAAGGTGAACTTGACCTTAATCATCAAGAATATTGTATGTCAGTTACTACTCCCTGCTCAGAATCCTCACCTGACCAGAATGTAAAAGAATTGCCA AGTTCTGAAATCTCTAGGCCTTCTAAGCATTTTCATTCAACTCTGGCAGACCCTAATTTTGTGGAAAATTATTTCAAGAGCTCAAGGCTGCATTTCATTG GGACTTGGAGAAATCGTTATCGAAAGCATTTTCCGGTCTCATCTACTTCGTTTAACAATGAAAATTCTAATATTCACGCCTCTCAGAATCCACTCATCGT CCATGTTGACATGGACTGCTTTTTTGTCTCGGTGGTTATCAGGAACCACCCTGTATTGTTGGACAAGCCAGTAGCAGTCTGTCACTCAAATAATTCGAAG GGAACTTCTGAGATTTCCTCTGCAAACTACCCTGCTCGTGGTTATGGTATTAGGGCTGGTATGTTTGTTCGAGATGCCAAGGCACTTTGTCCCCACCTTG TTATCTTTCCTTACAACTTTGAAGCTTATGAGGAAGTAGCTGATCAATTTTATAGTATACTACATCGACATTGCAGCAAAGTGCAGGTCTTATGGTCCAC AACCTATAAGTGTATAAAGTTTTTAGGTTGTTTGTCCTTAATGCTATAACCACCACTTCATGCAGGCTGTAAGCTGTGATGAAGCTTTTTTAGATGTCAC AGATTCAAAGGTTGAAGATCCTAAACTTTTTGCTGCAGCAATTAGAAAAGAGATCTATGAGACCACTGGATGTACGGCTAGTGCTGGTATAGCTGGAAAT ATGCTTATGGCTCGCATTGCCACTAGAACTGCAAAACCAAATGGTCAATATCACATAACTCCAGAAAAAGTTGAATACGAGTTAAGTCAACTCTCAATTA ATGCACTTCCTGGAATAGGGCATGTTTTACAGCAGAAATTGAAGAAACAGAAAGTTCACACTTGTGGGCAATTGCAAATGATTTCCAAGGCTTCCCTGCA AAAGGATTATGGAGTTAAAACGGGGGAAATGCTGTGGAATTATAGCAGAGGAATTGATAACAGGATGGTTGGGGCCATTCAGGAAAGTAAGTCTATTGGT GCTGATGTAAATTGGGGAGTTAGGTTCAAAGATATGAAAGATTGTGATCACTTCCTAATTAACCTCAGTAAGGAAGTTTCTTTGCGATTGCAAGGTTGCG GAGTGCAGGGGCGCACTTTCATTATCAAGATCAAAAAGAGAAGAAAAGATGCTGATGAACCTGCAAAGTTTATGGGCTGTGGTGACTGTGAAAATTTGAG TCACTCAATAACGATTCCTCTTGCTACTGATAATGTGGAAGTAATCCAAAGAATAGTAAAGCAGCTTTTTGGATTTTTCTACATAGATGTCAAGGATATT CGGGGTGTTGGCTTGCAGGTTTCAAGACTTGAAAGTGTAAATACTTCTAAGCAAGGTGCAGAAAAGTGTACTTTGAAATCATGGCTTACTTCAGGATCTG CAAGTATGGGAAAACAGAAATATCCTATGGGTAACAAGCAGAATATAGATGGCATGTCCAGTCATGGATGTAGAGATTTGCAAGGGTCTTCAGTTCTAAT AGACAATAACATAGTAAATAACCAAGCTAGTGCAGACACAATGTTAACAGCACCTCCTTTATGCCAACTAGATGTCGAAGTAATAAAGAATCTACCGCCA GAAGTATTCTCAGAATTAAATGAAATGTATGGAGGAAAGTTAGTTGATTTTGTTGCTAAAGGGAAAGGAACAAATGAGAGTGCTAGATCTGTACGAAATT TGATTATAGAGCAAGAAGGCAAGTTTTTCTATGTTATATTATTATAGCTGCTTTTACTAATACCCAAAATCATGCAGAAAAAGGCTACTTTTACTCATGA TTCATGAATGTTTGGCAATGCCCCATATGCTTTTTAATTGTGTTTCTTAGCAGCTATAAAGAAGGATGCAGAACTTTCCTATTCTGACCGAATTCCTCAA AACAAGTTGTTACCAGAAAACAAGGTAATTTTTTTACTTCATTCTTTACTCAAATACAGTGAAATATAGTCTAATATCACTAAATTACCCTTTTCTGATT TCATTAGTATTTGTTTCTCATAAATCTAACTTCTTCAACAATTCGATATATATATTACTTTATTAGCATATTTATTAAATTAATTAGAATAATTGAACTT GATGTTTTATTATTATTTGAGTTTGAACTTGTTATTTGAGTTTCTTTTAGATTATTTAAACTTTGATAGATTTGACTTAGTATGAGATTGTTGCAGTGTC TGAACTTTATATTTAGATTTATTTAATTTGATAATATTTAATTTTCAATATTATTGGATTTTTATTTTTTTTTATTTTTTTTATAAACCGTGGATAACGG GGATAAATTTTTCCTTGAAGCGGAGAGCGTGCAAGAAAATTAGTGGTAGGGATGGGGAGCGGGGGGAGTATTCCCTGCTCCTGCACCACTCCATCAGGGG AGTACTCCCTGCTCCCGCACTGGTCCATTGCTATCCCTATTTGTTTTAAACAATTACTTTTTTCTGCTTGCTTTTGCCTAGCGTTCATTAAAATCTTCGC TTAATTTTTGTTAGGTTTTGACTCAGTTAGATCTGGCTTTTTTGTCTCATTTTAATATTTTATAACATGCCAATTTTAACTAAAAACATTCATATGCCAA TTATATTTTATTATTTTGCTTTGGTTAATTCTAATGGTTTAATTCTTTCATTAACCTGATCTAACAGGTCAGTATCCGAGTGTGTAGGTTATATGCTTGA TTCAAATTGTTCTTACTCTAGCTTCTTTAATTAAGATTGTTCAGTTTGAAGTTTTAATAGGTTGAAAAGCACTTTAATATCTGAGTTTGAAGTTTTAATA GTTTTAATTTAGCAGTGCCATATCCACTCCTTCAGTCCTTTGTGGAAAGGAAGGCTTCCATGTACAGTCAATTAAATTATAATCTCCTTTCGGTAGCTAC TTTTATTTTTAGTAGCTTATTGGTTATTGCTATTGATACTGGAGTTACAATATCTAGAAATCAATGAAACATTATTTTGTTTGCTTTTATTTGTATTTAT TTTTCTACTTTTCAAAGAATAGCGTGTTTAGTTACATATATCATGATTAAATCCGAGGTAGTGCAGAAAGAAGCAGAGGTAGTTGAAGTAGGACCAGGCT CAAGGGATGGATCCTATGTCAAGGTTACTCACATTTCAAGTTTTGAGAAAGATGATTTATTGCCTTCTTCTTTAAGTCAAGTGGATGCTTCAGTGTTACG ACAATTACCCGAGGATTTGAAAGCCGCCATTGTTGAGCAGCTTCCTACACACAGGAGGCAAGAGTCTTGCTCCAATGCTGCTGTGCCCCCTCTTAGTGAA ATCGGTCAGGCACCATTAGGTATTAAAAGTTCTGAGAATCATTCTGGATCAAGTGGTCACGTTTCGAGTGAAAGTCTATGGGCTGGGAATCCTCCACATT GGATTGATAAGTTTAAAGTTAGCAATTGCTTCATATTAAAGAGGCTTGCAGAAATATATTACAAATCAGGGTTGACTAGCACATTATCTTCAGTTTTGCA CAAAATTATATATGAATTTCACGAGCTAGATCTAGCGCATCAGATTTCTGATGAAGCTATTAACATCACGTGTGAGCTACTGAAGCAGTATACCGAAGAG AAGATAGAAAGAGATATTGAAGAGATTTATATCTGTTTTCGGCTTCTGAAAAGGTTTGCAGCAAAGTCACAATTTTTCCTACAAGTGTACAATACTCTAT TTCCGCACCTCCAGGCAGCTGTTGATGACGCCTATGGAGGGACCTTGTTTATACCATCATAGTAGCATGCAAATAGTCAAAATCTCATCTAATGTGAGCA ACTCAAGAAAAAGTCACCAGTTTAGCTGTATAATCTGGACAGATCACAAACCAATGGTTTCAATCCACTATGACATCCTGCAGAGTATGTTTGACTTTAC CATGATAGCTAAACTTTTTCTGCAGCAAATTTGCTTGTTCTGGTGGATGTTGTATTTAATTTCTAGTGATATTTTTTCAATTTTATGCTTCATAGTGTCT GTTTTCAAAATTACCATTTTGTTCTGAAATTGTAAGATCCTTTTGTGAGTTTCGTCACTCCTTGGTCCTGCAAGACCTTTTGTCTGATGTAAATCCTCAT GTTAGTCTTTTCACCAGCATTAGTATTTTAATATGCCTTTGTGGCTGTGCAATTAATGTATAACTTCTTTATAGTTCATTTCATCCTTTTCATGATCTCT ATGTAATTATAAAATTCCTCCATATTCTCAA BLAST |
| Tissue | pods |
| Gene name | LI_gene_181475; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_388451
| Blastp | DNA repair protein REV1 from Arabidopsis with 53.02% of identity |
|---|---|
| Blastx | DNA repair protein REV1 from Arabidopsis with 53.19% of identity |
| Eggnog | Poorly processive error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by polIV. Exhibits no 3-5 exonuclease (proofreading) activity. May be involved in translesional synthesis in conjunction with the beta clamp from polIII (By similarity)(COG0389) |
| Kegg | Link to kegg annotations (AT5G44750) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019421546.1) |
| Pfam | BRCA1 C Terminus (BRCT) domain (PF00533.25) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |