| Id Trinity | TRINITY_DN50984_c2_g2_i3 |
|---|---|
| Name Transcript | Ll_transcript_386868 |
| Sequence | ATTAGAGATATAGAGAAGTTGTCTCTTTCTTCCTTTCTGTGAGAGAAGTGAAAGAAAGCAGAACAAAACAAAATCAGGTGCCAAAAAAGTTGATTCAAAG TGCTTTCTTGCGTAGCTTATTATCCTTTAGGAGTGAATATACATCATCATTTCACTTTGACTCTTATTTCTCATTCAAGTTTTATCTTCTTTAATTCATT ATTCAAAACTCAACCTTCCATTTTTTCCTTCAGATTCTTCCAAGTACAAACCTTACCTTTTGATCGAGTAAAGTTGAAGAAAATACATTATTTCAGAGTA CTATCTAATATCTGAACTCACTTCTTCATCTCAATGAGAGGAACGTGAATCTCACTGTTTCTACAAAAGGGTTGGTTAAAGTTCTTCTCTTTCCTTGGTG GGGTTTTCAGATTCAAACCAGTGGAAGCAAGTAACCCAGCCTTTTTTCTACAATTTCACTCTCTTTATTCAACGACCAAAAAAGTTTCAAAGTGAAAGAT TTCAATGAAGGAAGGTGTTATTGAGAAGAGTTTGGATCCGCAGCTATGGCACGCGTGTGCAGGGAGTATGATTCAGATGCCTCAGTTGAACTCCAAAGTT TTCTACTTTCCACAAGGTCATGCTGAACACGCTCAAACAACCCTTGATCTCACACCCTCTTTGAGGATTCCACCACTCATTCTATGCACACTTGCCTCAG TCAAATTCATGGCAGACACTGAAACTGATGAAGTCTTCGCCAAGATGTGGTTGGTTCCTCTTAGAAATTCCAACCTTGATGGCCTCAATGATGTTGATGT GGTTGAAAATTCAGAAAAGCCTGCATCTTTTGCCAAAACTTTAACTCAATCTGATGCTAATAATGGTGGTGGATTTTCTGTTCCAAGGTATTGTGCAGAA ACTATTTTTCCTCGCCTTGATTACTCGGCTGAACCGCCGGTTCAAACCGTGGTTGCCAAGGATGTCCATGGTGAGCTTTGGAAGTTTAGGCATATTTATA GAGGCACGCCTCGGCGCCATTTGCTTACAACTGGTTGGAGCACTTTTGTGAACCAGAAGAAACTAGTTGCTGGTGATTCTGTGGTATTTTTGAGGGCTGA AAATGGGGATCTTTGTATTGGAATCCGTAGGGCTAAGAAGGGAATTGGTGGTAGTACTGGTTCTGAGGTTTCATCTGGGTGGACCTCAGCTTCTGGACAT GGAAATTGTGGTGTTGGACCTTATGGTGCATTCTCTTTTTTCTTAAAAGAGGAGAATAAGTTTTTGAGAAATGGTTGTGGTGGTAATGGTGGTGGTTTGA GTGGAAGAGTGAAGGTGAGGCCTGAAGCTGTTATGGAAGCTATGACATTGGCTTCAAGGAACCAGCCATTTGAGGTTCTTTATTATCCAAGAGCTAGCAC TCCTGAGTTTTGCATTAAGGCTTCTGCTGTGAGGGATGCTATGAGAGTTCAATGGGACTCTGGAATGAGGTTTAAGATGCCCTTCGAAACCGAGGATTCT TCTAGGATAAGCTGGTTCATGGGGACTATAGCTTCTGTTCAAGTTGTCGATCCTATCAGATGGCCAAATTCCCCATGGCGACTTCTTCAGGTTACTTGGG ATGAGCCAGACTTGCTACAAAATGTGAAGCGTGTAAGCCCATGGTTGGTTGAATTGGTATCAAACATGCCAGTCGTCAATCTAACACCCTTTTCTCCACC AAGGAAGAAGCCGAGGTTTCCACAACACCCTGATTTCCCCCTTGACGTTCAATTTCCGATACCAATGTTTTCAGGCAACCAGCATGGGCATAACAACCCC TTGTGTGGTTTATCTGATAACGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCACTACGGAATATCTCTTTCAGATATCCACAATAACAATAATAAAC TGCAGTTGGGGTTGTTTCCAGCAAATATGCAGCAGCTTAATGTGATTTCAAATGCTAACTTGTCCAACCGTGTTAAAAGCAAAGAAAGCTTGTCATGCTT GCTTACCATAGGAAAATCTGATAAGACTTCGGAGAAATCTAACAATGTTGAGACACACCAGTTTTTGCTTTTCGGTCAACCAATACTCACTGAGCAACAA ATCTCTAGAAACTGTTCTAGGGATGTGTTCTCTCATGATTGTGCCGGAAAAAAATCAGTAGATGAGGTTAAGGATAAGGAAAAGTGTTTTTTTGGTGGCT CCAATTCTGCACTTACACAGCAGTTTCTACCAGGAAAACCTTCTGCCGAGTTTACTTGGCAACTCGGCTTGGATACCGGTCATTGCAAGGTTTTCTTGGA GTCAGAAGATGTAGGACGGACCTTAGACCTATCAAGTCTCGGTTCTTATGAAGAGTTATACAGGAGACTTTCCAACATGTTTGGTATTCAAAGGTCTGAG ATGTTGAACCATGTGCTTTACCGGGATGCAACAGGCGCCGTTAAGAATATTGGAGAAGAACCCTTCAGGTTTGTTTCCCCCCATCTTATGCCAATCATCA TTTTATTTGTCACTAAGGTACTTAAATCTGCCAGCACTGCCATGACTTCTAGCTTATATTTCTCAAATGCATATTTCAATCCAAGTCATATATTTATTA BLAST |
| Tissue | pods |
| Gene name | LI_gene_181489; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_386868
| Blastp | Auxin response factor 18 from Oryza sativa with 58.81% of identity |
|---|---|
| Blastx | Auxin response factor 18 from Oryza sativa with 59.25% of identity |
| Eggnog | auxin response factor(ENOG410ZZ2C) |
| Kegg | Link to kegg annotations (4341882) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019453963.1) |
| Pfam | B3 DNA binding domain (PF02362.20) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |