| Id Trinity | TRINITY_DN50992_c1_g1_i10 |
|---|---|
| Name Transcript | Ll_transcript_388826 |
| Sequence | TCACAATCAATTATGATCAAATCAAAGCAATTAAACATGTAGATTTGTCCCTTACTCACCCCTCCTATTCATATCTATATTAGATAGTGAAAATGAAATG ACCCACTACCAATATTACACTTTCTTTTAAAACATTGAACTCAACAACACACAAAATTTGTGAATGAGAGATTCATACATAGGTGTCCATTTCTATCACT CTGTTACTACTGTTAGTGGTTAAAACATCCTCAAATATCTTTATATCATGCATTGGAATGCTTGTTCAATTCCATATCCAATTTCTCAACAATCTCTCTA ACTATTACAGTGACAGTTTCTGTATGAACTTCTGAGGTGTTATCATGGAGTGGAATTCAAAATCACTAGGGCAATGGGACTGGGAGGAGAACTTATTCTT TTTCAATGGAAAAGCTTCAGAAAATACTAAGTTACAATCAACCACAAATTGGAGTTCTGAAGCAGATCAAGAAATCAATGTTGGGCTATTGTATCCTTCA GGGGTTAGTGTTTGTTCTGAGTCTGAACTAATACATGCTTCTTCATCATGGAGCTCAAAATCAGCTTCCATCAATTCATCATCGAATGAGGATAGCAAAA TATCAATGTTCACTTTGGAAGGTTCTCAACATGATGATTCAATTGGTAAGAAAAAAGTCTCCAAAGAAGAGCTAGTCGAAACTTCACGAGCACAAGAACC CTCATCCGTCTCTGGTGAGCCATTTCTCACTCTAAAGCTTGGTAAAAGGTTGTACCTTGAGGATGTTTCCACGGGAAGTGATTCCAAGAAACCGTCTTCG AGTGCTGGAAAGAAATGTAAATCCAATGGTCAGAACTTGCAACATCCAAGCTGCCAGGTTGAAGGCTGTGGCCTTGATCTCTCATCTGCGAAGGTTTACC ATCGCAACCATAGAGTTTGTGAAAATCATTCCAAATCCCCTAAGGTGGTAATATTTGGGTCGGAATGCCGATTTTGCCAGCAGTGTAGCAGGTTCCATGG TCTGTCAGAATTTGATGATAAAAAGAGAAGCTGTAGACGACGTCTTTCAGATCATAATGCTAGGCGCCGCAAACCGCATGCTGATGCAGTCCGATTAAAC ACACTGGCTTTGTCTTCATCGCCCTATGGTATAATTCTCGACAATGAGGGCATCCTTCTTCGTTTGAAAATCCATTAGCTTTGTCTTAGTCATCGGCTTA GCTTTGCAAGTTGTTTCAATTTCTGATGCATAGTAGATATCTTAAAATGATTCTGAAGAATTATAACAATTATCTGAAAATCCTTTTTAGTGATTTCCCC AGTGTATTTCAGTAATCTTAACTGTTCCAACTTTCAACAATTACTTGTTTAGTTTTAGCTTTGCAGTTGGTCTATGCATTCAGTTACTGATAGGAAACTT GTGGCCTATGAATGAATCATCTGATGCCCTTAGAATGCCGAAACATATAGTTTTGATTATAATATTTAATGGAGTGATTAGTGTTCAGCAATTTATGGAG ACTATAATGCATGTGAACATGAAATACGTTTAATATCAACTTGTGTACTGACATCAACCAATACAAGTAATTGTTATGGCCTTTTTCAACTTGAGTGTTG ACAGTTTAAAAGCATGATGTCCACACAAGTATGAAACTTCTCAACAAACCTGATTTATTACAATGCATATAGTCGACCCCACCTAGTGGAATTAAAGCTA GGTTGTACCTTGAGGATGTTTCCACTGCCTAATTTATGTTTGCTATGCAGATCGGAGGCAACTAATGAGCCCATTTGCATATTCAAGAACTGCTATAAAT TTAGCATGCCAAGACATACACAGCAGCAAGTTCCCTCACACAAAAGATTTTCTCATGAAGCCTGAAAAAGCCTTCAATAAGATACCAAGTGCTGGAGGCA TAGCAACCAAGAGTGTTATTACAGGTATAGAATATCCTATAACCTCTTCTGATCTGAATGCTACACACCGTGCTCTCTCTCTTCTGTCAAACAACTCATC ATGGAATACTGCATATGAGACCAACTCCTTCTCCATAACAACACATGCAATGTCTCATCATCACTTACCCTTTGCTTCATCAGGGTATTGGAACACTGAT CAGCAACCACCAAACTCCGCCATGTGTATCACCGTGGACTCGGATTGTGATAATAGCAATCGCTTTCAAGACTTCCAGTCGTGGAACGCACGCTATGAAT CTGGTTTTCCTCGAAACCAGCTGGATTAACAAATGTGTCTGTGTCTATGTGCTCATTCAAATGGTTTCAGCTTGATGAAGTCACATGCAGCCTAGTCTAA TTTCTTAGTCTTTAGGGTCTTACTGTCTGTTGCAATATTGGAGTGTGTTTACTTTTGTCGTCTTCATTAAAACCGTGGAGCATCGGCGCAATAATAAGGT TTCTTCCTGTCTTTAGACCTTAAAAGTTATAAGTTCGTGTCGAGGTAACTACGTATCTCGTTATTGGTAAGATTTTAGATATCTACCATCGTTTAACTCT ATCAGGTGGGAGCCTTGAAACTCTTTTCATGTGTATGAATAATTCCATCTAGAACTACTTTTATATCTATGCATGATGTAAATGGTGGTATATTTTTTTT GGTTTCCGACGAGTATCCTCGTATTGGAGCTAATCTTATTCGAGCCGAGAATATCTACAGGTATATGGGGCTAACTCTTTCAGTGGGTATTTTTTCCGTT TACAAAGCTCGAACCGATACTTTACTTAAGGGGAAGTATCACTTGCCCAGTTTGTTTATGTGTAAAATATAAAAAGAAAAAGGTTCTTGGAAAATCTTAG TTGTTTCTCAAAGTTAAGTA BLAST |
| Tissue | pods |
| Gene name | LI_gene_181568; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_388826
| Blastp | Squamosa promoter-binding-like protein 3 from Oryza sativa with 46.15% of identity |
|---|---|
| Blastx | Squamosa promoter-binding-like protein 3 from Oryza sativa with 45.05% of identity |
| Eggnog | Squamosa promoter-binding-like protein(ENOG410YKP9) |
| Kegg | Link to kegg annotations (9270639) |
| CantataDB | Link to cantataDB annotations (CNT0002899) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019417926.1) |
| Pfam | SBP domain (PF03110.13) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |