Id Trinity | TRINITY_DN50994_c1_g1_i8 |
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Name Transcript | Ll_transcript_389042 |
Sequence | GTATGTTCTATCCTCGGACAGGGTTGTTTCCGGTACAAAAAAATACAAACTAAAAAAAAAAAATTGAAGGTATATAAATACAAAAGTCACCTCTTTGTGT TCCTAAAAAAAAATGTACTCATTAGAAAAGCCACGTCCCATTGATTTCTACAAAGAAGAAGAAGAAAGCCCAGACATGATGATCGAAGTGGTCCCCACCA CCGACAACAACAACCACCACCACCTCCAACAACCACCGCCACCACCACCGCTAATCCTGACCGAGAGCAGCGGCGAGGACCCAGAACTGGACCAAATGAA AGCCCCCAAAAAACGCGCGGAGACATGGGTCCAAGACGAGACGCGTAACCTAATATCCCTTCGTCGTGAAATGGACGCGCTTTTCAACACTTCGAAATCG AACAAACACCTTTGGGAGCAGATTTCGGCGAAGATGAGGGACAAGGGTTTCGATCGTTCTCCAACTATGTGCACTGATAAATGGAGGAACTTGCTTAAGG AGTTCAAGAAAGCAAAGCACCAAGATAATAGAGGGAGTAGTAAGATGAGTTATTATAAAGAGATTGATGAGATTCTGAGAGAGAGGAGTTGTAAAACTCT GCATTATAAGACACCCACTCCTCCAACTCTTTCTAAAGTTGATTCCTTTATGCATTTTGCTGACAAAGGTTCTTCATTTTTCCCCATTCATACTCTCTAA CCTTTTTTATTTATTTTCCAATTCTTTCCTTTCAGTTTTAGAAACACTTGTTTTTTTGTTATCCCTCGCTCTTTTGGATAATGAACTAATCCTTTGACTC GCTCGACCTTTTTGGTCATCCCGGGTATAGCCGGAGACTTACACTACTAGACCAAGACCTTGGTGGTTAGAAGCACTTGTTTGATTGGTTATGTTGCTGT ACAGGTATTGAGGATGCTAGCATATCTTTTGGGCCTGTTGAAGGTATGTGTCATTGTAACATATTGCAATTGTTAGGTTATTATGTTTTAGTACTTTTTA TTATGTTCACTTGTTTCCTTTATTATAACATTTGGTTTACTACTAGATAGTTTTATTGGTAGATTTAGCTAATTGAAGTTATTTGAGACATGTATGTGGA ACAGTGAAGTATTTATAAGGAATGAACATGCTGATGTACTCATATGCATTCCCTTAAAATTTAACCATTATGATGGACATGCTTTTAGCGTTCTGGTATG CTCTTTTTTTTTGTGGTAATTGTTTTCATTTAATGATGGGAATAGTGGGATAAATGATGAAATGTTGTTACTTTGAAGGGCTTGTTGAAATGAGAGTTCA AAATATGCATCTGTAGAATGGGTAGTTCTGGGTATCATACTATCATATATTTACACGGAACTCGTTAACAAGGTAGTCAAATGTTTGCTGTCCCCACCGC AGGCCTCACTTTCACCGTAGCTGCCAATTCTTGTCTTGGTCACTCTCCTTAAGTACCTAGGTTTGTTTGGGTTCATGGGTGAGATTGAAGAGGGTTAAGT TTTGGGTTTTCAGGTGTTTTCGGTCTGGAAACTAGGTTCGGTCTAATTTGGGCTTAACCCCTGTTCCACGAAACAAGCCAAGCTCGAAAAAAGCAGAAAC AAGAGTGAGCATCTAGCTGTTTATCACTTTTCATTTGTCAAATTTCTCACTTCTAATAATTTATAGGAAATCATTAGGTTCATGTGTGACCAGGTAAATT TGTTCATAGAATGAAACCATTGATTAGAGGGTTTTAAGTGGTAAGGAGGAAAAAAAGAATTAGAGAATAATAAATAGCGAAGTAGAATTATGAGAGTGAC ATTGACATGGTGTGATGATAATGGTGATGTTACATTACAAAATACAATGCTAAGAATCTCATTTATACTATTGAGGAAACGGATAAGAAAATAATTAATA AAAAGTATCCCCCACGAGATCTTGTTAAGCACTCTAAAATGTTATTGGATACAATAAAGATATTTCAAGATAGTTTCTAGATATTCTAACACTCCCTCAA GCAAATGCTTAGTAAGCTTTGAACTTCTTACAAATGAACTAGGAGGGAATAATCGCACTTATTCTTACTTGTCAGTTGTAATTGTAAAGATGTCAGTATT TTGCTGCTCTGTAATGCCCAAAAATAGTATTTAATACCATTTTTACCCTTTTTATAGCATTTTGGGGAAATAAAAAGTGTTCATTGTTTCTTTTTGAGGA TATCTTATGCTCTTTTCATCTAGTATACTTCCTTTTTATCCGAAAAAGAAGTGTTGATCGTAATGGATGTAGCATATGTATTATCTCGTTTGGATGTTAA CCCATTCATTTTTTTTCATAGAAGTAGTTGCCATTTCATGTTTATCATAATACTCAAATACTTGACATTTAGCTAATGGGAGACCAACACTCAATCTTGA GAGAAGTTTGGATCATGATGGGCATCCTCTTGCCATTACCACAGCTGAAGCTGTTGCAGCAAGTGGAGTCCCTCCTTGGAATTGGAGAGAAACTCCTGAG AATGGTAAGCTATGTAAAATTTTGTAGCTTGATGTGAGCTTAATCACCAATGGATGACAACAATGGCAAAGAATATAAAAGTTAATGGCTTTATTTCTTA ATAATATATGTATTGTAAGTGTGGATAGGTTAATGTTTTGAAGAATTTTTGTAGAATCTAAAATAAGTTTGGTTAGTTCCATTCCGACCCCCTCCCCTCC TTTTTTTCTTTTTCCTCTCTAGCTAAAGATGAGTCTTGGCGCAACCATAACATTACTGCTCTCTCCTGACATGGAGGTCACGAGTTCAAATATTGGAAAC AGTCTCTTTACTTGTGGAGGTTATTGCACTAGGCCACCAATTTTCTCTCTAGCTACTAGAGTGGCCATTATACTTTCTTATTTTTGCTTCTGGTTCTTCC TATTTTAGCAGGTGGGGAAAGTCAGTCATGTTGTGGAAGGGTTATATCGGTGAAATGGGGTGATTATACAAGACGTATTGGTATTGATGGCACTGCAGAA GCCATTAAGGAGGCAATTAGGTCTGCTTTTAGATTGAGAACTAGACGTGCATTTTGGTTGGAGGATGAAGAACAAATTATCAGAAGTATTGACCGTGACA TGCCCTTAGGAAATTACACTCTTCACCTTGATGAAGGAATGGCTGTTAAAGTATGTCTCTATGATGAGTCTGACCATATCTCTGTGCACACTGAAGAGAA GATCTTCTACACTGAAGATGATTACCGTGATTTTCTGACGCGCCGAGGTTGGACATGTCTAAGGGAGTTTGATGGCTATAGAAATATTGACAATATGGAT GATCTTCGACCTGGTGCCATATATCGTGGTGTGAGTTGAGAGTGCAGGTGCAGGTACATGGTATGATCGATGTTTAGCTGTTTAACTATAAGATGAACTT GGGTGGGAGGAGACTGTTTATGTCAGTACTATACGTGTAATATTTAAGTTTGTAAAATGCTGCTTATCTAATCTACTATAGAAAATGAACTATGGCCCAT GCACAGATTCAGTTCCAATCATTGGCCTCAACATGTCTGTAAATAACTAAATATGCATTTGCTGATCAAACATATTGATTACTGTTTTGGAAATTAGGAC TTGTCATATAGGAATGTATGTTTAACTATAAGATAATTGAAAGACAAACAAAGAATATGAAGTATGTAGTCAATCAATTTTTGTAGGTAATAATTGGTAG GAGCTGTTGGGTTTGTTAGGAAGTGATGTTCATGTATGTCTCCCATGGAGAATGACAGAGTTATATGAGAGTGCAGAGACTTAATTCACAGCGTTTGGAT TAAAATGAATGACTTAGATTAGATACCGCT BLAST |
Tissue | pods |
Gene name | LI_gene_181592; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_389042
Blastp | Trihelix transcription factor GT-1 from Arabidopsis with 61.72% of identity |
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Blastx | Trihelix transcription factor GT-4 from Arabidopsis with 76.6% of identity |
Eggnog | DNA binding protein GT-1(ENOG410XUBM) |
Kegg | Link to kegg annotations (AT1G13450) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019417471.1) |
Pfam | Myb/SANT-like DNA-binding domain (PF13837.5) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |