| Id Trinity | TRINITY_DN51025_c0_g1_i12 |
|---|---|
| Name Transcript | Ll_transcript_529210 |
| Sequence | ATTCATTCCTCTCCACGTGTCACCGCCATAGCCAATATATACAGAAAAAAGAAAAAGCGATTTAAAAATAACCCAAACCACACTCTTTAACCATGGTTAA TTTCTAACCACACCAACTTCATCATAAAAATTCTATCCTCTCTCTCCTCTTACTATATCTCAGATCTAACATCACCAGCACCACCTCTTCAGAAAACGAC GTCGTTTCATCGTTGAAATCGCAACCATGCAGAAAATGGCGTATTCGTTCCCAGAGGAAGTTCTAGAGCACGTGTTCTCCTTCATCCACTGCAACAAGGA TCGAAGCTCAATCTCCACGGTGTGCAAATCATGGTACGAAATCGAACGGTGGTGCAGGAAGAACGTTTTCATCGGTAACTGCTACTCCGTGAGTCCTACG GTGGTGATTAACCGCTTCCCGGAGGTTAGATCCATAGAGCTGAAAGGGAAACCGCATTTCGCGGATTTCAATTTGGTACCTGAGGGTTGGGGCGGTTATG TTTGTCCTTGGATCGAAGCTATGGCGTGTGGTTACCCTTGGCTTGAAGAGATCAAGCTTAAGAGGATGGTTGTAACGGATGAGAGCTTGGAACTTATTGC GAAATCGTTTAAGAATTTCAAGGCTTTGGTTCTCACTTCGTGTGAGGGTTTCACTAATGTTGGACTTGCTGCAATTGCTGCTAATTGCAGGTCATTTTTT GATTTCGTGCACTGAGTCGCCCAGTTATAAAATGGTTTTTGTTTGTTACTATATTAGGTTTTTACTAGCTTAATATGGTTAGATTTGGTATAACTATTTA TCTTTTGATAAATTAATGGTCTAATGAAATGTGATACTGGCGATTGGTTTGTTTTTGTGTTTTATTTTGTTGTGGTGATAATGATGGTGAAACCGTGAAA TGAAGCTAAGAAAATGTGCTTTCATGTTTTCTTTCACATAGAAAGTAAAATAAGTGAAAAAGATGGTTTTTTTAAATGTTACTGAAATTATATTACAAAT TTGAAATCAAAACAAGAAAAGTCCAACGTTAATAAATATTTTTTCCGTATTATTTCCTTTATTTTGGGCTTTAATTTTGGTGGAAGGATTTAAAATTGAA GTTGTATTATGTGGTATACTTTATTTGTGAGTTATTCTGGGTAGTGGATTCGACAGACTTGCTGTTATGTTCAGCTAATTTTTTCCAGGTCTATGGTACT GGATCAAAGGGACTAACCACTTACCAATGGATTGTGGTTATGCTTCGGAGTTTAGATATCTTCTTTCTTACTAAATCAAGCATTATTGGCCACCTTTTGA TGTGTATGTATGTTTTTCATTATTTAATAAAATAAAAAAAATTGACACTTCAATACCTTGAAACATACTACTAAATCCTTTGATTATTTGTCTTGGTTGT TTATGATTTGATTTTAGGGGGTTAGATGTATATTTGGCAATGTTTTGGTTGTTGAAATAATGGAGTGTTCTTAATATTTCTTGTCTGATTTCACTCTGAG CTCCATTTCTATTTTCCTCCTATTCATCATGGGAAACTTGCATGAATGATGTTGACTTTGGCTTGGTGTCGTTCAATTTACTGTATTCTATATTTAGTAA AATAAATCTTGAGGATCCCTATGTCTGAACTGAAGTGTCTTATAACTGTTATTGATAAATCCACTGTCTGTGAATACACTGTAGGGGTTTGAGGATGTTG GACTTGCATGAGAGTGGAGACGAGGACCTCAATGGGAATTGGCTAAGCCATTTTCCTGATTCATACAAGTCATTAGTGTCACTTAACATCTCTTGCTTAG GCAATGAGGTGAGTTTGCCTGCACTAGAGCGCCTCCTTGCTAGGTGTCCCAATCTGCAGACCCTCCGACTGAATCGCGCGGTGCCCCTTGATAGGCTAGC TAACCTACTTCGTCGGTGTCCTCAGCTGGTAGAATTAGGTACAGGAGTCTACTCCACTGAGATGCGTCCAGAGGTTTTTGCAAACCTAACTGAAGCATTT TCTGGGTGCCGGCAATTGAAGTGCTTGTCTGGCTTTTGGGATGTGCTCCCAACCTATCTTGCAGCTGTTTATCCTATCTGCTCCAGGATAACATCATTAA ACTTGAGTTATGCTATCCTGCAAAGCTCTGATCTTATCAAGCTTGTCAGTCAATGCCCTAGTTTGACGCGATTATGGGTATGTCTGATTTATATGTTTTC CAAAGTTCTATTGTAAATTCTTATGGTAATTAATTGAGCTCCATGCTGTAGGTACTAGATTATATAGAAGATGCTGGCCTTGATGCTCTTGCTGCCTCGT GCAAGGATCTAAACGAGTTGAGGGTGTTTCCATCTGACCCATTTGGGTTAGAACCAAATGTTGCATTGACAGAACAAGGCCTTGTTTCCGTGTCTGAAGG CTGCCCAAAGCTCCAGTCTGTTCTATACTTTTGCCGTCAAATGTCTAATGCAGCTCTACATACAATTGCCCGGAACAGGCCTAATATGACTCGTTTTCGC CTATGTATTATTGAGCCTCGAACTCCAGATTATCTTACCCTTCAACCTCTGGATTCTGGTTTTGGGGCTATTGTAGAGCATTGCAAGGATCTTCAGCGCC TATCGCTTTCTGGTCTACTTACTGATCGTGTTTTCGAGTACATTGGGACTTATGCGAAGAAGCTGGAGATGCTATCTGTGGCTTTTGCTGGAGAAAGTGA TTTGGGGCTCCATCATGTGCTGTCTGGTTGTGACAATCTTCGGAAGCTGGAGATCAGGGACTGTCCCTTTGGTGATAAGGCCCTTTTGGCCAATGCTGCA AAGCTGGAGACAATGCGATCCCTTTGGATGTCCTCTTGCTCCGTGAGTTATGGAGCATGCAAGCTGCTGGGTCAGAAAATGCCAAGACTTAATGTTGAAG TCATTGATGAAAGAGGACCTCCAGATTCAAGGCCAGACACTTGTCCCGTTGAGAAGCTTTATATATACAGGACTATTGCCGGGCCAAGATCGGACATGCC TGGTTTTGTCTGGACAATGAAAGATGATTCTTCACCAAGGCTTGAGTGATCACCTTCTGATTTAGCGACAAAATTTATCAGCATTTTGATGTGGGAAATT GTTATTGGCAGGTGCATGCTCAGGTTACTATCAGCATTCTGTGGTTGCACTCATGGTTCGTGTTTGAGCTACGCAAAGGAGTGTGTACACACAACCGAAA CAAGGCTTGAGCTTCGCCATTCTTTTACTCTTTGGCGGAGCATACCTATTTACGGATTAATAAAGAAACTGAAACTATGTTGTTGTGTGTTTCTCAGATA CTAATACACAGCTACTACAACTGTTCTATTATTTTTCATACTAAAATATTTGCTGACTTAAATTTAATTGCATATTACCTTTGTCTCCTGTACCTCTATC TTGGACACATTTGTCATTGTTAACCTTCTCAGTGAATATTTCATATTGTAATGCAACTATGATGCATTTATGTCATTGTACCTGGCTTTCTGTATTTTAT TCAAGTATAGTCTTGGAGCTGATTTAACAATTAAGATGAGCCATCAATTCCCAATGCGTGTGAACCCAATAATGATTCTCATGTTGAAAAGGGTTTTGAC ATTCAATGAAATAGTTTTGG BLAST |
| Tissue | pods |
| Gene name | LI_gene_181806; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_529210
| Blastp | Protein TRANSPORT INHIBITOR RESPONSE 1 from Arabidopsis with 85.57% of identity |
|---|---|
| Blastx | Protein TRANSPORT INHIBITOR RESPONSE 1 from Arabidopsis with 85.23% of identity |
| Eggnog | F-box and leucine-rich repeat protein(ENOG410XQ54) |
| Kegg | Link to kegg annotations (AT3G62980) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019421520.1) |
| Pfam | Leucine Rich repeat (PF13516.5) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |