| Id Trinity | TRINITY_DN51057_c1_g2_i1 |
|---|---|
| Name Transcript | Ll_transcript_528831 |
| Sequence | CTTAGAAGAATAAAAGGCAGAATTTGCATTGCGTTGGAATTCTGCGACAAAGCTAACAGCGAAACTTCGATTCAACTCAAATCTCATATTAATCATGGCC ACGACGGAGCTGATTTTAAAACCGTCGTGCGGTGGTTGTGGTTCAACGGCCGATCTCTACGGAAGTAACTGCAAGCACATGACTCTGTGTTTAACATGCG GCAAAACCATGGCGGAAAACCGCGCCAAATGCGTTGTTTGTGACGCTACTATCACTCGCTTGATTCGAGAATATAATGTTCGTGCAAGTACTAGCAATGA CAAGAACTATTTTATTGGAAGGTTCATCAGTGGCTTACCTGATTTTTCAAAGAAGAAGAGTGCTGAAAACAAGTGGTCTCTGCAGAAGGATGGACTGCAT GGGCGACAAATTACCGAGTCTTTGCGGGAGAAGTACAAGAATAAGCCTTGGCTCTTGGAGGATGAAACAGGTCAATCCCAGTACCAGGGTCATCTAGAAG GTTCACAATCAGCTACATATTACCTTCTAATGATGGAAAAAAAGGAGTTTTTTGCCATTCCTGCTGGTTCTTGGTATAATTTCAACAAGGTTGCACAATA TAAGCAATTGACTCTGGAAGAAGCAGAGGAGAAGATGAAGAACAGAAAGAAAACTGCAGATGGATATCAAAGATGGATGATGAAAGCAGCAAATAACGGG CCTGCTGCTTTCGGCGAACATGTGAGGTTGGAGGACAAGGAAACCAACACTGGTGGAGGCAGAAGCCGTAAAAAAACCGGTGAGGATGATGAAGGCCATG TCTCTGATAAAGGGGAGGAGGATGAAGACGAGGAAGCAGGAAGGAAGAATAGGCTTGGACTTAATAAAAGAGATGGTGATGATGATGAAGAAGGTCTAAG GGGAGGCGACCTTGATCTAGATGATGATGATATTGAGAAGGGCGATGACTGGGAGCATGAAGAGATTTTCACTGATGATGATGAAGCTGTTGGAAATGAT CCTGAGGAAAGGGAAGATTTGGCTCCTGAAATTCCTGCTCCTCCTGAAATCAAACAGGATGAGGAGGAGGAGGATGAAAACAATGAAGAGGGGGGAGGTC TGAGTAAATCTGGGAAAGAGCTGAAGAAACTTCTTGGGCGATCTGGTGGTCTAAATGAATCTGATGCAGAGGATGATGAAGATGATGGCGATGATGGCGA TGACGATGATGTGGACGATGAGGTTGGTGTTCTTCCTGTGATTGCTACAAAAAATAAGAAGGAGCCTAAGGAAGAACCTGTTGACAACAACCCTTCAAAA CCCCCAGCAACAGGTCCTTCTCGCGGAACACCTAATTCAAAGTCTTCAAAGGGGAAGAGAAAATTGAACGAGGAAGCAAAACCATCTAATAGTGCTCTAC CGAAGAAGGTGAAGACAGAAAATGAATCAAAAGCATCTGTCAAAGATGTAAATGGGTCTGCATCTAAAAGTAATGCACCTCCAAAAGGCACACCTTCAGC ACCTCCACCATCAAAAGCTGGTTCTTCCACCACAGCTTCTGGGCCTGTGAGCGAGGAAGAAATTAGGGCTGTTTTAAGGCAAAAGACTCCAGTGACCACA CAGGATCTTGTAGCTAAATTTAAGGCTAGACTCAGATCTTCAGAGGATAAGAAAGCGTTTGCAGAGATACTGAAGAGAATCTCTAAGATACAGAAAACTA CTAATGGATCCGGTTATGTCATCCTGAGAGATAGTAGGTGAGAATGTATTATTTCAGTGTGCGACTCCTGTTTTTTAAACTCCTTCAAAAACTTGACTTC ATACTTCACAAATGGTTTACAACTTCCAAATGGGAGTGAAGATGGAGATTATATGTTCCAGCTTTTACAAGTTCAAATGTGTAATAATAGTACTTATACA TACTATCATTACAGATGTTTTTCCTCTCATTACTTGTTACCTTATTACAAATTATTATAGATGACACTCATAGATCTTATTATAATTTATCTGCATTTCA AAAACCATTGTGACTCGTGTAAGATAACTTATGATCTTTAACCAATGTACTTTATTAATAGGAGGTAGCAACAGATTACAAAATTAGTTTGACCATAACT ACAAAACCACTAGTGTTTCAAAAATGATATAACGATATAGCAATAAAAACAAGCGTAATAGCACTTATTGCGACTAAAATATGGAGAACCTTTGTTTCTT TGTGTTCTTATTTTTACACATTGGTTGGTGCCAAAGAAATTTACTATTATACAATATCAATGATGCAATACATTCTTCTTAGACACTAACTATAATTGTC TGTACCGTTCAAGAATAAAGAAATATAACAAGGCTGGACCTAAACACACCAAGACACGAGACAAAGGTAAATTAATATAGCTAATAGAGAAAACAATATG CAGTATCAGTATCCAGCGTTAGCTGTGATGGTCGTAATCTCATCATGGATGGGCAACGCAAGCTTCTTCTTCCTGCTTCCAGCTGCAACCATCAGGTTAT AGGCTAACACCACTGCCTTGGGCAACAAGACTAAAAATCGCAATAGGTGCTGCTAAGGCTCTTTCCTTCTTGCATGGAGCTAAGAAACCAGTCATTCATG GAGACTTCAAGAGTTCTAATGTTTTGCTTGATTCAGACTTCACAGCAAAATTGTCGGATTTTGGACTAGCAAAAGTGGGACCTGAGGGATCAAAATCACA TGTTACAACCAGAGTTATGGGCACCTATGGATATGCAGCCCCAGAATACATCTCAACAGCAGGTAAACTTAACTTAAAAAATAAAGAGCTATGTTCAAAT AACAATGAAGTCATACGCACATATGTCTAGATTGGAATATCAAATTATAAGCTTGGAGGATCAAGTAAAAGCTTTGGAAGCAAAACTATCTGTAGTTTA BLAST |
| Tissue | pods |
| Gene name | LI_gene_182021; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_528831
| Blastp | Transcription initiation factor IIF subunit alpha from Arabidopsis with 65.33% of identity |
|---|---|
| Blastx | Transcription initiation factor IIF subunit alpha from Arabidopsis with 73.21% of identity |
| Eggnog | General transcription factor IIF, polypeptide 1(ENOG410XSRW) |
| Kegg | Link to kegg annotations (AT4G12610) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019425985.1) |
| Pfam | Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) (PF05793.11) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |